Discovering riboswitches: the past and the future

K Kavita, RR Breaker - Trends in biochemical sciences, 2023 - cell.com
Riboswitches are structured noncoding RNA domains used by many bacteria to monitor the
concentrations of target ligands and regulate gene expression accordingly. In the past 20 …

Tandem spinach array for mRNA imaging in living bacterial cells

J Zhang, J Fei, BJ Leslie, KY Han, TE Kuhlman, T Ha - Scientific reports, 2015 - nature.com
Live cell RNA imaging using genetically encoded fluorescent labels is an important tool for
monitoring RNA activities. A recently reported RNA aptamer-fluorogen system, the Spinach …

Pushing the limits of nucleic acid function

EA Curtis - Chemistry–A European Journal, 2022 - Wiley Online Library
For many decades it was thought that information storage and information transfer were the
main functions of nucleic acids. However, artificial evolution experiments have shown that …

Electrophilic activity-based RNA probes reveal a self-alkylating RNA for RNA labeling

RI McDonald, JP Guilinger, S Mukherji… - Nature chemical …, 2014 - nature.com
Probes that form covalent bonds with RNA molecules on the basis of their chemical reactivity
would advance our ability to study the transcriptome. We developed a set of electrophilic …

Sequence requirements of intrinsically fluorescent G-quadruplexes

T Majerová, T Streckerová, L Bednárová, EA Curtis - Biochemistry, 2018 - ACS Publications
G-Quadruplexes are four-stranded nucleic acid structures typically stabilized by GGGG
tetrads. These structures are intrinsically fluorescent, which expands the known scope of …

Altered biochemical specificity of G-quadruplexes with mutated tetrads

K Švehlová, MS Lawrence, L Bednárová… - Nucleic Acids …, 2016 - academic.oup.com
A fundamental motif in canonical nucleic acid structure is the base pair. Mutations that
disrupt base pairs are typically destabilizing, but stability can often be restored by a second …

Emergence of ATP‐and GTP‐Binding Aptamers from Single RNA Sequences by Error‐Prone Replication and Selection

F Wachowius, BT Porebski, CM Johnson… - …, 2023 - Wiley Online Library
The spontaneous emergence of function from diverse RNA sequence pools is widely
considered an important transition in the origin of life. Here we show that diverse sequence …

A human microRNA precursor binding to folic acid discovered by small RNA transcriptomic SELEX

N Terasaka, K Futai, T Katoh, H Suga - RNA, 2016 - rnajournal.cshlp.org
RNA aptamers are structured motifs that bind to specific molecules. A growing number of
RNAs bearing aptamer elements, whose functions are modulated by direct binding of …

Emergence of function from single RNA sequences by Darwinian evolution

F Wachowius, BT Porebski, CM Johnson, P Holliger - bioRxiv, 2021 - biorxiv.org
The spontaneous emergence of function from pools of random sequence RNA is widely
considered an important transition in the origin of life. However, the plausibility of this …

Big on change, small on innovation: evolutionary consequences of RNA sequence duplication

A Plebanek, C Larnerd, M Popović, C Wei… - Journal of Molecular …, 2019 - Springer
The potential for biopolymers to evolve new structures has important consequences for their
ability to optimize function and our attempts to reconstruct their evolutionary histories. Prior …