Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities

BF Tan, C Ng, JP Nshimyimana, LL Loh… - Frontiers in …, 2015 - frontiersin.org
Water quality is an emergent property of a complex system comprised of interacting
microbial populations and introduced microbial and chemical contaminants. Studies …

Next generation sequencing approaches to evaluate water and wastewater quality

E Garner, BC Davis, E Milligan, MF Blair, I Keenum… - Water Research, 2021 - Elsevier
The emergence of next generation sequencing (NGS) is revolutionizing the potential to
address complex microbiological challenges in the water industry. NGS technologies can …

Taxonomical and functional microbial community selection in soybean rhizosphere

LW Mendes, EE Kuramae, AA Navarrete… - The ISME …, 2014 - academic.oup.com
This study addressed the selection of the rhizospheric microbial community from the bulk
soil reservoir under agricultural management of soybean in Amazon forest soils. We used a …

Microbial community structures in different wastewater treatment plants as revealed by 454-pyrosequencing analysis

M Hu, X Wang, X Wen, Y Xia - Bioresource technology, 2012 - Elsevier
In this study, 454-pyrosequencing technology was employed to investigate the microbial
communities in 12 municipal wastewater treatment plants (WWPTs) with different treatment …

Impact of long-term N, P, K, and NPK fertilization on the composition and potential functions of the bacterial community in grassland soil

Y Pan, N Cassman, M de Hollander… - FEMS microbiology …, 2014 - academic.oup.com
Soil abiotic and biotic interactions govern important ecosystem processes. However, the
mechanisms behind these interactions are complex, and the links between specific …

Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities

MA Peabody, T Van Rossum, R Lo, FSL Brinkman - BMC bioinformatics, 2015 - Springer
Background The field of metagenomics (study of genetic material recovered directly from an
environment) has grown rapidly, with many bioinformatics analysis methods being …

Flow cytometry applications in water treatment, distribution, and reuse: A review

HR Safford, HN Bischel - Water research, 2019 - Elsevier
Ensuring safe and effective water treatment, distribution, and reuse requires robust methods
for characterizing and monitoring waterborne microbes. Methods widely used today can be …

Bacterial community profiling of milk samples as a means to understand culture-negative bovine clinical mastitis

JS Kuehn, PJ Gorden, D Munro, R Rong, Q Dong… - PloS one, 2013 - journals.plos.org
Inflammation and infection of bovine mammary glands, commonly known as mastitis,
imposes significant losses each year in the dairy industry worldwide. While several different …

Metagenomic analyses of drinking water receiving different disinfection treatments

V Gomez-Alvarez, RP Revetta… - Applied and …, 2012 - Am Soc Microbiol
ABSTRACT A metagenome-based approach was used to assess the taxonomic affiliation
and function potential of microbial populations in free-chlorine-treated (CHL) and …

Groundwater isolation governs chemistry and microbial community structure along hydrologic flowpaths

S Ben Maamar, L Aquilina, A Quaiser… - Frontiers in …, 2015 - frontiersin.org
This study deals with the effects of hydrodynamic functioning of hard-rock aquifers on
microbial communities. In hard-rock aquifers, the heterogeneous hydrologic circulation …