An overview of biomedical entity linking throughout the years

E French, BT McInnes - Journal of biomedical informatics, 2023 - Elsevier
Abstract Biomedical Entity Linking (BEL) is the task of mapping of spans of text within
biomedical documents to normalized, unique identifiers within an ontology. This is an …

Knowledge-graph-enabled biomedical entity linking: a survey

J Shi, Z Yuan, W Guo, C Ma, J Chen, M Zhang - World Wide Web, 2023 - Springer
Abstract Biomedical Entity Linking (BM-EL) task, which aims to match biomedical mentions
in articles to entities in a certain knowledge base (eg, the Unified Medical Language …

Biomedical entity representations with synonym marginalization

M Sung, H Jeon, J Lee, J Kang - arXiv preprint arXiv:2005.00239, 2020 - arxiv.org
Biomedical named entities often play important roles in many biomedical text mining tools.
However, due to the incompleteness of provided synonyms and numerous variations in their …

医学知识图谱构建关键技术及研究进展

谭玲, 鄂海红, 匡泽民, 宋美娜, 刘毓, 陈正宇… - 大 …, 2021 - infocomm-journal.com
摘要随着互联网技术的不断迭代更新, 对海量数据的语义理解变得越来越重要.
知识图谱是一种揭示实体之间关系的语义网络, 医学是知识图谱应用较广的垂直领域之一 …

Improving broad-coverage medical entity linking with semantic type prediction and large-scale datasets

S Vashishth, D Newman-Griffis, R Joshi, R Dutt… - Journal of biomedical …, 2021 - Elsevier
Objectives Biomedical natural language processing tools are increasingly being applied for
broad-coverage information extraction—extracting medical information of all types in a …

Medical concept normalization in clinical trials with drug and disease representation learning

Z Miftahutdinov, A Kadurin, R Kudrin… - …, 2021 - academic.oup.com
Motivation Clinical trials are the essential stage of every drug development program for the
treatment to become available to patients. Despite the importance of well-structured clinical …

[HTML][HTML] A simple neural vector space model for medical concept normalization using concept embeddings

D Xu, T Miller - Journal of biomedical informatics, 2022 - Elsevier
Objective Medical concept normalization (MCN), the task of linking textual mentions to
concepts in an ontology, provides a solution to unify different ways of referring to the same …

[HTML][HTML] Medical concept normalization in French using multilingual terminologies and contextual embeddings

P Wajsbürt, A Sarfati, X Tannier - Journal of Biomedical Informatics, 2021 - Elsevier
Introduction Concept normalization is the task of linking terms from textual medical
documents to their concept in terminologies such as the UMLS®. Traditional approaches to …

Mapping vaccine names in clinical trials to vaccine ontology using cascaded fine-tuned domain-specific language models

J Li, Y Li, Y Pan, J Guo, Z Sun, F Li, Y He… - Journal of Biomedical …, 2024 - Springer
Background Vaccines have revolutionized public health by providing protection against
infectious diseases. They stimulate the immune system and generate memory cells to …

BBAEG: Towards BERT-based biomedical adversarial example generation for text classification

I Mondal - arXiv preprint arXiv:2104.01782, 2021 - arxiv.org
Healthcare predictive analytics aids medical decision-making, diagnosis prediction and drug
review analysis. Therefore, prediction accuracy is an important criteria which also …