A trajectory-based method to explore reaction mechanisms

SA Vázquez, XL Otero, E Martinez-Nunez - Molecules, 2018 - mdpi.com
The tsscds method, recently developed in our group, discovers chemical reaction
mechanisms with minimal human intervention. It employs accelerated molecular dynamics …

AutoMeKin2021: An open‐source program for automated reaction discovery

E Martínez‐Núñez, GL Barnes… - Journal of …, 2021 - Wiley Online Library
AutoMeKin2021 is an updated version of tsscds2018, a program for the automated
discovery of reaction mechanisms (J. Comput. Chem. 2018, 39, 1922). This release features …

An automated method to find reaction mechanisms and solve the kinetics in organometallic catalysis

JA Varela, SA Vázquez, E Martínez-Núñez - Chemical science, 2017 - pubs.rsc.org
A novel computational method is proposed in this work for use in discovering reaction
mechanisms and solving the kinetics of transition metal-catalyzed reactions. The method …

New tools for taming complex reaction networks: the unimolecular decomposition of indole revisited

D Garay-Ruiz, M Álvarez-Moreno, C Bo… - ACS Physical …, 2022 - ACS Publications
The level of detail attained in the computational description of reaction mechanisms can be
vastly improved through tools for automated chemical space exploration, particularly for …

tsscds2018: A code for automated discovery of chemical reaction mechanisms and solving the kinetics

A Rodríguez, R Rodríguez‐Fernández… - Journal of …, 2018 - Wiley Online Library
A new software, called tsscds2018, has been developed to discover reaction mechanisms
and solve the kinetics in a fully automated fashion. The program employs algorithms based …

Enhancing automated reaction discovery with boxed molecular dynamics in energy space

RA Jara‐Toro, GA Pino, DR Glowacki… - …, 2020 - Wiley Online Library
The rare event acceleration method “Boxed Molecular Dynamics in Energy space”(BXDE) is
interfaced in the present work with the automated reaction discovery method AutoMeKin. To …

vdW‐TSSCDS—An automated and global procedure for the computation of stationary points on intermolecular potential energy surfaces

S Kopec, E Martínez‐Núñez, J Soto… - International Journal of …, 2019 - Wiley Online Library
We present a generalization of the transition state search using chemical dynamics
simulations (TSSCDS) methodology (discussed in a previous study) which allows the …

Photodissociation of Benzoyl Chloride: A Velocity Map Imaging Study Using VUV Detection of Chlorine Atoms

CT Matthaei, DP Mukhopadhyay… - The Journal of Physical …, 2021 - ACS Publications
UV photodissociation of benzoyl chloride, Ph–CO–Cl, is associated with the loss of a
chlorine atom. Here we excite benzoyl chloride to the S1, S2, and S3 excited states at 237 …

Determination of kinetic properties in unimolecular dissociation of complex systems from graph theory based analysis of an ensemble of reactive trajectories

AF Perez-Mellor, R Spezia - The Journal of Chemical Physics, 2021 - pubs.aip.org
In this paper, we report how graph theory can be used to analyze an ensemble of
independent molecular trajectories, which can react during the simulation time-length, and …

Spectroscopic characterization and photochemistry of the vinylsulfinyl radical

Z Wu, L Wang, B Lu, AK Eckhardt… - Physical Chemistry …, 2021 - pubs.rsc.org
The simplest α, β-unsaturated sulfinyl radical CH2C (H) SO˙ has been generated in the gas
phase by high-vacuum flash pyrolysis (HVFP) of sulfoxide CH2C (H) S (O) CF3 at ca. 800° …