Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA

C Simon, TR Buckley, F Frati, JB Stewart… - Annu. Rev. Ecol …, 2006 - annualreviews.org
DNA data has been widely used in animal phylogenetic studies over the past 15 years. Here
we review how these studies have used advances in knowledge of molecular evolutionary …

The current state of insect molecular systematics: a thriving Tower of Babel

MS Caterino, S Cho, FAH Sperling - Annual review of …, 2000 - annualreviews.org
▪ Abstract Insect molecular systematics has undergone remarkable recent growth. Advances
in methods of data generation and analysis have led to the accumulation of large amounts of …

Bayesian selection of continuous-time Markov chain evolutionary models

MA Suchard, RE Weiss… - Molecular biology and …, 2001 - academic.oup.com
We develop a reversible jump Markov chain Monte Carlo approach to estimating the
posterior distribution of phylogenies based on aligned DNA/RNA sequences under several …

Higher-order phylogeny of modern birds (Theropoda, Aves: Neornithes) based on comparative anatomy. II. Analysis and discussion

BC Livezey, RL Zusi - Zoological journal of the Linnean Society, 2007 - academic.oup.com
In recent years, avian systematics has been characterized by a diminished reliance on
morphological cladistics of modern taxa, intensive palaeornithogical research stimulated by …

Molecular systematics of Xenocyprinae (Teleostei: Cyprinidae): taxonomy, biogeography, and coevolution of a special group restricted in East Asia

W Xiao, Y Zhang, H Liu - Molecular phylogenetics and evolution, 2001 - Elsevier
We surveyed mitochondrial DNA (mtDNA) sequence variation in the subfamily
Xenocyprinae from China and used these data to estimate intraspecific, interspecific, and …

Gastropod evolutionary rates and phylogenetic relationships assessed using partial 28S rDNA and histone H3 sequences

DJ Colgan, WF Ponder, PE Eggler - Zoologica Scripta, 2000 - Wiley Online Library
Sequence data for two segments of 28S and Histone H3 from 36 gastropod taxa, a chiton,
two bivalves and Nautilus are used to test recently published morphology‐based …

Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates

PB Frandsen, B Calcott, C Mayer, R Lanfear - BMC evolutionary biology, 2015 - Springer
Background Model selection is a vital part of most phylogenetic analyses, and accounting for
the heterogeneity in evolutionary patterns across sites is particularly important. Mixture …

Accurate branch length estimation in partitioned Bayesian analyses requires accommodation of among-partition rate variation and attention to branch length priors

DC Marshall, C Simon, TR Buckley - Systematic Biology, 2006 - academic.oup.com
Molecular phylogenetic studies are making increasing use of partitioned Bayesian analyses
via software tools like MrBayes, version 3 (Ronquist and Huelsenbeck, 2003). Data …

Analysis of the mitochondrial 12S rRNA gene supports a two-clade hypothesis of the evolutionary history of scleractinian corals

CA Chen, CC Wallace, J Wolstenholme - Molecular Phylogenetics and …, 2002 - Elsevier
Scleractinian corals have long been assumed to be a monophyletic group characterized by
the possession of an aragonite skeleton. Analyses of skeletal morphology and molecular …

Modernizing the toolkit for arthropod bloodmeal identification

EM Borland, RC Kading - Insects, 2021 - mdpi.com
Simple Summary The ability to identify the source of vertebrate blood in mosquitoes, ticks,
and other blood-feeding arthropod vectors greatly enhances our knowledge of how vector …