Understanding nucleic acid–ion interactions

J Lipfert, S Doniach, R Das… - Annual review of …, 2014 - annualreviews.org
Ions surround nucleic acids in what is referred to as an ion atmosphere. As a result, the
folding and dynamics of RNA and DNA and their complexes with proteins and with each …

A guide to ions and RNA structure

DE Draper - Rna, 2004 - rnajournal.cshlp.org
RNA folding into stable tertiary structures is remarkably sensitive to the concentrations and
types of cations present; an understanding of the physical basis of ion-RNA interactions is …

Nucleic-acid therapeutics: basic principles and recent applications

JB Opalinska, AM Gewirtz - Nature Reviews Drug Discovery, 2002 - nature.com
The sequencing of the human genome and the elucidation of many molecular pathways that
are important in disease have provided unprecedented opportunities for the development of …

Three-dimensional structure of a hammerhead ribozyme

HW Pley, KM Flaherty, DB McKay - Nature, 1994 - nature.com
The hammerhead ribozyme is a small catalytic RNA motif made up of three base-paired
stems and a core of highly conserved, non-complementary nucleotides essential for …

Modified oligonucleotides: synthesis and strategy for users

S Verma, F Eckstein - Annual review of biochemistry, 1998 - annualreviews.org
Synthetic oligonucleotide analogs have greatly aided our understanding of several
biochemical processes. Efficient solid-phase and enzyme-assisted synthetic methods and …

Mechanism and utility of an RNA-cleaving DNA enzyme

SW Santoro, GF Joyce - Biochemistry, 1998 - ACS Publications
We previously reported the in vitro selection of a general-purpose RNA-cleaving DNA
enzyme that exhibits a catalytic efficiency (k cat/KM) exceeding that of any other known …

A DNA enzyme with Mg2+-dependent RNA phosphoesterase activity

RR Breaker, GF Joyce - Chemistry & biology, 1995 - cell.com
Background: Previously we demonstrated that DNA can act as an enzyme in the Pb 2t-
dependent cleavage of an RNA phosphoester. This is a facile reaction, with an uncatalyzed …

In vitro selection and characterization of a highly efficient Zn(II)-dependent RNA-cleaving deoxyribozyme

J Li, W Zheng, AH Kwon, Y Lu - Nucleic acids research, 2000 - academic.oup.com
A group of highly efficient Zn (II)-dependent RNA-cleaving deoxyribozymes has been
obtained through in vitro selection. They share a common motif with the '8 …

Ribozyme structures and mechanisms

EA Doherty, JA Doudna - Annual review of biochemistry, 2000 - annualreviews.org
▪ Abstract The past few years have seen exciting advances in understanding the structure
and function of catalytic RNA. Crystal structures of several ribozymes have provided detailed …

[HTML][HTML] Tertiary contacts distant from the active site prime a ribozyme for catalysis

M Martick, WG Scott - Cell, 2006 - cell.com
Minimal hammerhead ribozymes have been characterized extensively by static and time-
resolved crystallography as well as numerous biochemical analyses, leading to mutually …