Mapping and identification of a potential candidate gene for a novel maturity locus, E10, in soybean

B Samanfar, SJ Molnar, M Charette… - Theoretical and Applied …, 2017 - Springer
Key message E10 is a new maturity locus in soybean and FT4 is the predicted/potential
functional gene underlying the locus. Abstract Flowering and maturity time traits play crucial …

Large-Scale prediction of human protein− protein interactions from amino acid sequence based on latent topic features

XY Pan, YN Zhang, HB Shen - Journal of proteome research, 2010 - ACS Publications
Protein− protein interaction (PPI) is at the core of the entire interactomic system of any living
organism. Although there are many human protein− protein interaction links being …

PPI‐Detect: a support vector machine model for sequence‐based prediction of protein–protein interactions

S Romero‐Molina, YB Ruiz‐Blanco… - Journal of …, 2019 - Wiley Online Library
The prediction of peptide–protein or protein–protein interactions (PPI) is a challenging task,
especially if amino acid sequences are the only information available. Machine learning …

Protein-protein interaction prediction using a hybrid feature representation and a stacked generalization scheme

KH Chen, TF Wang, YJ Hu - BMC bioinformatics, 2019 - Springer
Background Although various machine learning-based predictors have been developed for
estimating protein–protein interactions, their performances vary with dataset and species …

Evolving knowledge graph similarity for supervised learning in complex biomedical domains

RT Sousa, S Silva, C Pesquita - BMC bioinformatics, 2020 - Springer
Background In recent years, biomedical ontologies have become important for describing
existing biological knowledge in the form of knowledge graphs. Data mining approaches …

Simple sequence-based kernels do not predict protein–protein interactions

J Yu, M Guo, CJ Needham, Y Huang, L Cai… - …, 2010 - academic.oup.com
Motivation: A number of methods have been reported that predict protein–protein
interactions (PPIs) with high accuracy using only simple sequence-based features such as …

SPRINT: ultrafast protein-protein interaction prediction of the entire human interactome

Y Li, L Ilie - BMC bioinformatics, 2017 - Springer
Background Proteins perform their functions usually by interacting with other proteins.
Predicting which proteins interact is a fundamental problem. Experimental methods are …

Robust and accurate prediction of protein–protein interactions by exploiting evolutionary information

Y Li, Z Wang, LP Li, ZH You, WZ Huang, XK Zhan… - Scientific Reports, 2021 - nature.com
Various biochemical functions of organisms are performed by protein–protein interactions
(PPIs). Therefore, recognition of protein–protein interactions is very important for …

Recent advances in protein–protein interaction prediction: experimental and computational methods

M Jessulat, S Pitre, Y Gui, M Hooshyar… - Expert opinion on …, 2011 - Taylor & Francis
Introduction: Proteins within the cell act as part of complex networks, which allow pathways
and processes to function. Therefore, understanding how proteins interact is a significant …

Homology-based prediction of interactions between proteins using averaged one-dependence estimators

Y Murakami, K Mizuguchi - BMC bioinformatics, 2014 - Springer
Background Identification of protein-protein interactions (PPIs) is essential for a better
understanding of biological processes, pathways and functions. However, experimental …