Artificial intelligence in the prediction of protein–ligand interactions: recent advances and future directions

A Dhakal, C McKay, JJ Tanner… - Briefings in …, 2022 - academic.oup.com
New drug production, from target identification to marketing approval, takes over 12 years
and can cost around $2.6 billion. Furthermore, the COVID-19 pandemic has unveiled the …

Chalcone derivatives: promising starting points for drug design

MN Gomes, EN Muratov, M Pereira, JC Peixoto… - Molecules, 2017 - mdpi.com
Medicinal chemists continue to be fascinated by chalcone derivatives because of their
simple chemistry, ease of hydrogen atom manipulation, straightforward synthesis, and a …

InstaDock: A single-click graphical user interface for molecular docking-based virtual high-throughput screening

T Mohammad, Y Mathur, MI Hassan - Briefings in Bioinformatics, 2021 - academic.oup.com
Exploring protein–ligand interactions is a subject of immense interest, as it provides deeper
insights into molecular recognition, mechanism of interaction and subsequent functions …

Computational protein–ligand docking and virtual drug screening with the AutoDock suite

S Forli, R Huey, ME Pique, MF Sanner, DS Goodsell… - Nature protocols, 2016 - nature.com
Computational docking can be used to predict bound conformations and free energies of
binding for small-molecule ligands to macromolecular targets. Docking is widely used for the …

Potential of Plant Bioactive Compounds as SARS‐CoV‐2 Main Protease (Mpro) and Spike (S) Glycoprotein Inhibitors: A Molecular Docking Study

TE Tallei, SG Tumilaar, NJ Niode, fnm Fatimawali… - …, 2020 - Wiley Online Library
Since the outbreak of the COVID‐19 (coronavirus disease 19) pandemic, researchers have
been trying to investigate several active compounds found in plants that have the potential to …

Evaluation of AutoDock and AutoDock Vina on the CASF-2013 benchmark

T Gaillard - Journal of chemical information and modeling, 2018 - ACS Publications
Computer-aided protein–ligand binding predictions are a valuable help in drug discovery.
Protein–ligand docking programs generally consist of two main components: a scoring …

In silico identification of potential inhibitors from Cinnamon against main protease and spike glycoprotein of SARS CoV-2

D Prasanth, M Murahari, V Chandramohan… - Journal of …, 2021 - Taylor & Francis
Cinnamon has been utilized to remedy a lot of afflictions of humans. Literary works illustrate
that it possesses numerous biological activities. Our research study is intended to recognize …

Past, present, and future perspectives on computer-aided drug design methodologies

D Bassani, S Moro - Molecules, 2023 - mdpi.com
The application of computational approaches in drug discovery has been consolidated in
the last decades. These families of techniques are usually grouped under the common …

Network pharmacology-based prediction of the active ingredients and potential targets of Chinese herbal Radix Curcumae formula for application to cardiovascular …

W Tao, X Xu, X Wang, B Li, Y Wang, Y Li… - Journal of …, 2013 - Elsevier
ETHNOPHARMACOLOGY RELEVANCE: Cardiovascular and cerebrovascular diseases
(CCVD), an abnormal function of the heart, brain or blood vessels, are the biggest cause of …

Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently

A Currin, N Swainston, PJ Day, DB Kell - Chemical Society Reviews, 2015 - pubs.rsc.org
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …