Next generation sequencing and bioinformatics methodologies for infectious disease research and public health: approaches, applications, and considerations for …

I Maljkovic Berry, MC Melendrez… - The Journal of …, 2020 - academic.oup.com
Next generation sequencing (NGS) combined with bioinformatics has successfully been
used in a vast array of analyses for infectious disease research of public health relevance …

Decoding the impact of nuclear organization on antigenic variation in parasites

A Barcons-Simon, M Carrington, TN Siegel - Nature Microbiology, 2023 - nature.com
Antigenic variation as a strategy to evade the host adaptive immune response has evolved
in divergent pathogens. Antigenic variation involves restricted, and often mutually exclusive …

Plasmodium falciparum is evolving to escape malaria rapid diagnostic tests in Ethiopia

SM Feleke, EN Reichert, H Mohammed… - Nature …, 2021 - nature.com
In Africa, most rapid diagnostic tests (RDTs) for falciparum malaria recognize histidine-rich
protein 2 antigen. Plasmodium falciparum parasites lacking histidine-rich protein 2 (pfhrp2) …

Increased circulation time of Plasmodium falciparum underlies persistent asymptomatic infection in the dry season

CM Andrade, H Fleckenstein, R Thomson-Luque… - Nature Medicine, 2020 - nature.com
The dry season is a major challenge for Plasmodium falciparum parasites in many malaria
endemic regions, where water availability limits mosquito vectors to only part of the year …

Genome organization and DNA accessibility control antigenic variation in trypanosomes

LSM Müller, RO Cosentino, KU Förstner, J Guizetti… - Nature, 2018 - nature.com
Many evolutionarily distant pathogenic organisms have evolved similar survival strategies to
evade the immune responses of their hosts. These include antigenic variation, through …

Malaria protection due to sickle haemoglobin depends on parasite genotype

G Band, EM Leffler, M Jallow, F Sisay-Joof, CM Ndila… - Nature, 2022 - nature.com
Host genetic factors can confer resistance against malaria, raising the question of whether
this has led to evolutionary adaptation of parasite populations. Here we searched for …

Drug resistance and vaccine target surveillance of Plasmodium falciparum using nanopore sequencing in Ghana

ST Girgis, E Adika, FE Nenyewodey… - Nature …, 2023 - nature.com
Malaria results in over 600,000 deaths annually, with the highest burden of deaths in young
children living in sub-Saharan Africa. Molecular surveillance can provide important …

Refining the transcriptome of the human malaria parasite Plasmodium falciparum using amplification-free RNA-seq

L Chappell, P Ross, L Orchard, TJ Russell, TD Otto… - BMC genomics, 2020 - Springer
Background Plasmodium parasites undergo several major developmental transitions during
their complex lifecycle, which are enabled by precisely ordered gene expression programs …

Molecular markers for malaria genetic epidemiology: progress and pitfalls

S Ruybal-Pesántez, K McCann, J Vibin, S Siegel… - Trends in …, 2024 - cell.com
Over recent years, progress in molecular markers for genotyping malaria parasites has
enabled informative studies of epidemiology and transmission dynamics. Results have …

[HTML][HTML] Evolutionary analysis of the most polymorphic gene family in falciparum malaria

TD Otto, SA Assefa, U Böhme, MJ Sanders… - Wellcome Open …, 2019 - ncbi.nlm.nih.gov
The var gene family of the human malaria parasite Plasmodium falciparum encode proteins
that are crucial determinants of both pathogenesis and immune evasion and are highly …