Challenges and perspectives in computational deconvolution of genomics data

LX Garmire, Y Li, Q Huang, C Xu, SA Teichmann… - Nature …, 2024 - nature.com
Deciphering cell-type heterogeneity is crucial for systematically understanding tissue
homeostasis and its dysregulation in diseases. Computational deconvolution is an efficient …

Systematic review and meta-analysis of oral squamous cell carcinoma associated oral microbiome

TK Peter, MHH Withanage, CL Comnick… - Frontiers in …, 2022 - frontiersin.org
The intersection between the human oral microbiome and oral health is an emerging area of
study which has gained momentum over the last decade. This momentum has motivated a …

A meta-analysis of immune-cell fractions at high resolution reveals novel associations with common phenotypes and health outcomes

Q Luo, VB Dwaraka, Q Chen, H Tong, T Zhu, K Seale… - Genome Medicine, 2023 - Springer
Background Changes in cell-type composition of tissues are associated with a wide range of
diseases and environmental risk factors and may be causally implicated in disease …

Telehealth Parenting Program and Salivary Epigenetic Biomarkers in Preschool Children With Developmental Delay: NIMHD Social Epigenomics Program

SM Merrill, C Hogan, AK Bozack, A Cardenas… - JAMA Network …, 2024 - jamanetwork.com
Importance Children with developmental delays are at a heightened risk of experiencing
mental health challenges, and this risk is exacerbated among racially minoritized children …

The Impact of Early Life Adversity on Peripubertal Accelerated Epigenetic Aging and Psychopathology

CM Hogan, SM Merrill, EH Valencia… - Journal of the American …, 2024 - Elsevier
Objective To examine longitudinal associations between early life threat and deprivation on
epigenetic age acceleration at ages 9 and 15 years, and to examine associations of age …

Self-control is associated with health-relevant disparities in buccal DNA-methylation measures of biological aging in older adults

YE Willems, A deSteiguer, PT Tanksley, L Vinnik… - Clinical …, 2024 - Springer
Self-control is a personality dimension that is associated with better physical health and a
longer lifespan. Here, we examined (1) whether self-control is associated with buccal and …

Intervening after trauma: child–parent psychotherapy treatment is associated with lower pediatric epigenetic age acceleration

ADW Sullivan, SM Merrill, C Konwar… - Psychological …, 2024 - journals.sagepub.com
Early-life adversity increases the risk of health problems. Interventions supporting protective
and responsive caregiving offer a promising approach to attenuating adversity-induced …

Utilizing epigenetics to study the shared nature of development and biological aging across the lifespan

L Raffington - npj Science of Learning, 2024 - nature.com
Recently, biological aging has been quantified in DNA-methylation samples of older adults
and applied as so-called “methylation profile scores”(MPSs) in separate target samples …

Novel epigenetic network biomarkers for early detection of esophageal cancer

AK Maity, TC Stone, V Ward, AP Webster, Z Yang… - Clinical …, 2022 - Springer
Background Early detection of esophageal cancer is critical to improve survival. Whilst
studies have identified biomarkers, their interpretation and validity is often confounded by …

Impact of age-related changes in buccal epithelial cells on pediatric epigenetic biomarker research

SM Merrill, C Konwar, F Fatima, K Dever… - Nature …, 2025 - nature.com
Cheek swabs, heterogeneous samples consisting primarily of buccal epithelial cells, are
widely used in pediatric DNA methylation studies and biomarker creation. However, the …