[HTML][HTML] From Omics to Multi-Omics: A Review of Advantages and Tradeoffs

CN Hayes, H Nakahara, A Ono, M Tsuge, S Oka - Genes, 2024 - mdpi.com
Bioinformatics is a rapidly evolving field charged with cataloging, disseminating, and
analyzing biological data. Bioinformatics started with genomics, but while genomics focuses …

Multi-omics profiling of hypertrophic cardiomyopathy reveals altered mechanisms in mitochondrial dynamics and excitation–contraction coupling

J Moore, J Ewoldt, G Venturini, AC Pereira… - International journal of …, 2023 - mdpi.com
Hypertrophic cardiomyopathy is one of the most common inherited cardiomyopathies and a
leading cause of sudden cardiac death in young adults. Despite profound insights into the …

The influences of ApoE isoforms on endothelial adherens junctions and actin cytoskeleton responding to mCRP

Z Zhang, W Lin, Q Gan, M Lei, B Gong, C Zhang… - Angiogenesis, 2024 - Springer
Abstract Apolipoprotein E4 (ApoE 4) plays an important role responding to monomeric C-
reactive protein (mCRP) via binding to CD31 leading to cerebrovascular damage and …

Proteomic and phosphoproteomic profiling in heart failure with preserved ejection fraction (HFpEF)

M Valero-Muñoz, EL Saw, RM Hekman… - Frontiers in …, 2022 - frontiersin.org
Although the prevalence of heart failure with preserved ejection fraction (HFpEF) is
increasing, evidence-based therapies for HFpEF remain limited, likely due to an incomplete …

[HTML][HTML] Artificial intelligence-based prediction of molecular and genetic markers for hepatitis C–related hepatocellular carcinoma

C Colak, Z Kucukakcali, S Akbulut - Annals of Medicine and …, 2023 - journals.lww.com
Background: Hepatocellular carcinoma (HCC) is the main cause of mortality from cancer
globally. This paper intends to classify public gene expression data of patients with Hepatitis …

Genetic basis of thermal nociceptive sensitivity and brain weight in a BALB/c reduced complexity cross

JA Beierle, EJ Yao, SI Goldstein… - Molecular …, 2022 - journals.sagepub.com
Thermal nociception involves the transmission of temperature-related noxious information
from the periphery to the CNS and is a heritable trait that could predict transition to persistent …

Multiomic metabolic enrichment network analysis reveals metabolite–protein physical interaction subnetworks altered in cancer

BC Blum, W Lin, ML Lawton, Q Liu, J Kwan… - Molecular & Cellular …, 2022 - ASBMB
Metabolism is recognized as an important driver of cancer progression and other complex
diseases, but global metabolite profiling remains a challenge. Protein expression profiling is …

Integration of metabolomic and proteomic data to uncover actionable metabolic pathways

C Heckendorf, BC Blum, W Lin, ML Lawton… - Cancer Systems and …, 2023 - Springer
Mass spectrometry (MS) is an important tool for biological studies because it is capable of
interrogating a diversity of biomolecules (proteins, drugs, metabolites) not captured via …

[HTML][HTML] Proteomic Discovery of RNA-Protein Molecular Clamps Using a Thermal Shift Assay with ATP and RNA (TSAR)

SI Goldstein, AC Fan, Z Wang, SK Naineni, J Lengqvist… - bioRxiv, 2024 - ncbi.nlm.nih.gov
Uncompetitive inhibition is an effective strategy for suppressing dysregulated enzymes and
their substrates, but discovery of suitable ligands depends on often-unavailable structural …

[HTML][HTML] PANAMA-enabled high-sensitivity dual nanoflow LC-MS metabolomics and proteomics analysis

W Lin, F Mousavi, BC Blum, CF Heckendorf… - Cell Reports …, 2024 - cell.com
High-sensitivity nanoflow liquid chromatography (nLC) is seldom employed in untargeted
metabolomics because current sample preparation techniques are inefficient at preventing …