[HTML][HTML] Harnessing sub-organelle metabolism for biosynthesis of isoprenoids in yeast

X Cao, S Yang, C Cao, YJ Zhou - Synthetic and systems biotechnology, 2020 - Elsevier
Current yeast metabolic engineering in isoprenoids production mainly focuses on rewiring of
cytosolic metabolic pathway. However, the precursors, cofactors and the enzymes are …

Mitochondria in ageing: there is metabolism beyond the ROS

M Breitenbach, M Rinnerthaler, J Hartl… - FEMS yeast …, 2014 - academic.oup.com
Mitochondria are responsible for a series of metabolic functions. Superoxide leakage from
the respiratory chain and the resulting cascade of reactive oxygen species-induced damage …

RNALocate: a resource for RNA subcellular localizations

T Zhang, P Tan, L Wang, N Jin, Y Li… - Nucleic acids …, 2017 - academic.oup.com
Increasing evidence has revealed that RNA subcellular localization is a very important
feature for deeply understanding RNA's biological functions after being transported into intra …

ComPPI: a cellular compartment-specific database for protein–protein interaction network analysis

DV Veres, DM Gyurkó, B Thaler, KZ Szalay… - Nucleic acids …, 2015 - academic.oup.com
Here we present ComPPI, a cellular compartment-specific database of proteins and their
interactions enabling an extensive, compartmentalized protein–protein interaction network …

CYCLoPs: a comprehensive database constructed from automated analysis of protein abundance and subcellular localization patterns in Saccharomyces cerevisiae

JLY Koh, YT Chong, H Friesen, A Moses… - G3: Genes …, 2015 - academic.oup.com
Abstract Changes in protein subcellular localization and abundance are central to biological
regulation in eukaryotic cells. Quantitative measures of protein dynamics in vivo are …

LoQAtE—Lo calization and Q uantitation AT las of the yeast proteom E. A new tool for multiparametric dissection of single-protein behavior in response to biological …

M Breker, M Gymrek, O Moldavski… - Nucleic acids …, 2014 - academic.oup.com
Living organisms change their proteome dramatically to sustain a stable internal milieu in
fluctuating environments. To study the dynamics of proteins during stress, we measured the …

Absence of mitochondrial translation control proteins extends life span by activating sirtuin-dependent silencing

A Caballero, A Ugidos, B Liu, D Öling, K Kvint, X Hao… - Molecular cell, 2011 - cell.com
Altered mitochondrial functionality can extend organism life span, but the underlying
mechanisms are obscure. Here we report that inactivating SOV1, a member of the yeast …

Predicting protein–protein interactions from sequence using correlation coefficient and high-quality interaction dataset

MG Shi, JF Xia, XL Li, DS Huang - Amino acids, 2010 - Springer
Identifying protein–protein interactions (PPIs) is critical for understanding the cellular
function of the proteins and the machinery of a proteome. Data of PPIs derived from high …

RegPhos: a system to explore the protein kinase–substrate phosphorylation network in humans

TY Lee, J Bo-Kai Hsu, WC Chang… - Nucleic acids …, 2011 - academic.oup.com
Protein phosphorylation catalyzed by kinases plays crucial regulatory roles in intracellular
signal transduction. With the increasing number of experimental phosphorylation sites that …

Regulation of iron homeostasis mediated by the heme-binding protein Dap1 (damage resistance protein 1) via the P450 protein Erg11/Cyp51

RJ Craven, JC Mallory, RA Hand - Journal of biological chemistry, 2007 - ASBMB
Fungal infections arise frequently in immunocompromised patients, and sterol synthesis is a
primary pathway targeted by antifungal drugs. In particular, the P450 protein Erg11/Cyp51 …