The genomic consequences of hybridization

BM Moran, C Payne, Q Langdon, DL Powell… - Elife, 2021 - elifesciences.org
In the past decade, advances in genome sequencing have allowed researchers to uncover
the history of hybridization in diverse groups of species, including our own. Although the …

Variation in recombination frequency and distribution across eukaryotes: patterns and processes

J Stapley, PGD Feulner… - … of the Royal …, 2017 - royalsocietypublishing.org
Recombination, the exchange of DNA between maternal and paternal chromosomes during
meiosis, is an essential feature of sexual reproduction in nearly all multicellular organisms …

Recent demographic history inferred by high-resolution analysis of linkage disequilibrium

E Santiago, I Novo, AF Pardiñas… - Molecular Biology …, 2020 - academic.oup.com
Inferring changes in effective population size (N e) in the recent past is of special interest for
conservation of endangered species and for human history research. Current methods for …

Ancient DNA and deep population structure in sub-Saharan African foragers

M Lipson, EA Sawchuk, JC Thompson, J Oppenheimer… - Nature, 2022 - nature.com
Multiple lines of genetic and archaeological evidence suggest that there were major
demographic changes in the terminal Late Pleistocene epoch and early Holocene epoch of …

Linkage disequilibrium–dependent architecture of human complex traits shows action of negative selection

S Gazal, HK Finucane, NA Furlotte, PR Loh… - Nature …, 2017 - nature.com
Recent work has hinted at the linkage disequilibrium (LD)-dependent architecture of human
complex traits, where SNPs with low levels of LD (LLD) have larger per-SNP heritability …

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

E Huerta-Sánchez, X Jin, Asan, Z Bianba, BM Peter… - Nature, 2014 - nature.com
As modern humans migrated out of Africa, they encountered many new environmental
conditions, including greater temperature extremes, different pathogens and higher …

Understanding the genetic basis of variation in meiotic recombination: past, present, and future

SE Johnston - Molecular Biology and Evolution, 2024 - academic.oup.com
Meiotic recombination is a fundamental feature of sexually reproducing species. It is often
required for proper chromosome segregation and plays important role in adaptation and the …

The genomic landscape of Neanderthal ancestry in present-day humans

S Sankararaman, S Mallick, M Dannemann, K Prüfer… - Nature, 2014 - nature.com
Genomic studies have shown that Neanderthals interbred with modern humans, and that
non-Africans today are the products of this mixture,. The antiquity of Neanderthal gene flow …

Partitioning heritability of regulatory and cell-type-specific variants across 11 common diseases

A Gusev, SH Lee, G Trynka, H Finucane… - The American Journal of …, 2014 - cell.com
Regulatory and coding variants are known to be enriched with associations identified by
genome-wide association studies (GWASs) of complex disease, but their contributions to …

A linear complexity phasing method for thousands of genomes

O Delaneau, J Marchini, JF Zagury - Nature methods, 2012 - nature.com
Human-disease etiology can be better understood with phase information about diploid
sequences. We present a method for estimating haplotypes, using genotype data from …