Ancient DNA analysis

L Orlando, R Allaby, P Skoglund… - Nature reviews …, 2021 - nature.com
Although the first ancient DNA molecules were extracted more than three decades ago, the
first ancient nuclear genomes could only be characterized after high-throughput sequencing …

Ancient pathogen genomics as an emerging tool for infectious disease research

MA Spyrou, KI Bos, A Herbig, J Krause - Nature Reviews Genetics, 2019 - nature.com
Over the past decade, a genomics revolution, made possible through the development of
high-throughput sequencing, has triggered considerable progress in the study of ancient …

The prehistoric peopling of Southeast Asia

H McColl, F Racimo, L Vinner, F Demeter, T Gakuhari… - Science, 2018 - science.org
The human occupation history of Southeast Asia (SEA) remains heavily debated. Current
evidence suggests that SEA was occupied by Hòabìnhian hunter-gatherers until~ 4000 …

The use and domestication of Theobroma cacao during the mid-Holocene in the upper Amazon

S Zarrillo, N Gaikwad, C Lanaud, T Powis… - Nature ecology & …, 2018 - nature.com
Cacao (Theobroma cacao L.) is an important economic crop, yet studies of its domestication
history and early uses are limited. Traditionally, cacao is thought to have been first …

Ancient genomes revisit the ancestry of domestic and Przewalski's horses

C Gaunitz, A Fages, K Hanghøj, A Albrechtsen, N Khan… - Science, 2018 - science.org
The Eneolithic Botai culture of the Central Asian steppes provides the earliest
archaeological evidence for horse husbandry,~ 5500 years ago, but the exact nature of early …

Ancient genomic changes associated with domestication of the horse

P Librado, C Gamba, C Gaunitz, C Der Sarkissian… - Science, 2017 - science.org
The genomic changes underlying both early and late stages of horse domestication remain
largely unknown. We examined the genomes of 14 early domestic horses from the Bronze …

Population‐level inferences from environmental DNA—Current status and future perspectives

EE Sigsgaard, MR Jensen… - Evolutionary …, 2020 - Wiley Online Library
Environmental DNA (eDNA) extracted from water samples has recently shown potential as a
valuable source of population genetic information for aquatic macroorganisms. This …

A robust framework for microbial archaeology

C Warinner, A Herbig, A Mann… - Annual review of …, 2017 - annualreviews.org
Microbial archaeology is flourishing in the era of high-throughput sequencing, revealing the
agents behind devastating historical plagues, identifying the cryptic movements of …

A guide to carrying out a phylogenomic target sequence capture project

T Andermann, MF Torres Jiménez… - Frontiers in …, 2020 - frontiersin.org
High-throughput DNA sequencing techniques enable time-and cost-effective sequencing of
large portions of the genome. Instead of sequencing and annotating whole genomes, many …

Declining genetic diversity of European honeybees along the twentieth century

G Espregueira Themudo, A Rey-Iglesia… - Scientific reports, 2020 - nature.com
Abstract The European honeybee (Apis mellifera) is a key pollinator and has in the last
decades suffered significant population decline. A combination of factors, including …