Situational Data Integration in Question Answering systems: a survey over two decades

MH Franciscatto, LC Erpen de Bona, C Trois… - … and Information Systems, 2024 - Springer
Question Answering (QA) systems provide accurate answers to questions; however, they
lack the ability to consolidate data from multiple sources, making it difficult to manage …

Computational algorithms to predict Gene Ontology annotations

P Pinoli, D Chicco, M Masseroli - BMC bioinformatics, 2015 - Springer
Background Gene function annotations, which are associations between a gene and a term
of a controlled vocabulary describing gene functional features, are of paramount importance …

Software suite for gene and protein annotation prediction and similarity search

D Chicco, M Masseroli - IEEE/ACM Transactions on …, 2014 - ieeexplore.ieee.org
In the computational biology community, machine learning algorithms are key instruments
for many applications, including the prediction of gene-functions based upon the available …

Integration and querying of genomic and proteomic semantic annotations for biomedical knowledge extraction

M Masseroli, A Canakoglu… - IEEE/ACM Transactions on …, 2015 - ieeexplore.ieee.org
Understanding complex biological phenomena involves answering complex biomedical
questions on multiple biomolecular information simultaneously, which are expressed …

Ontology-based prediction and prioritization of gene functional annotations

D Chicco, M Masseroli - IEEE/ACM Transactions on …, 2015 - ieeexplore.ieee.org
Genes and their protein products are essential molecular units of a living organism. The
knowledge of their functions is key for the understanding of physiological and pathological …

Genomic data integration: A case study on next generation sequencing of cancer

E Weitschek, F Cumbo, E Cappelli… - 2016 27th International …, 2016 - ieeexplore.ieee.org
Due to the great advances of Next Generation Sequencing (NGS) techniques,
bioinformaticians are faced with large amounts of genomic and clinical data, which are …

Detection of gene annotations and protein-protein interaction associated disorders through transitive relationships between integrated annotations

M Masseroli, A Canakoglu, M Quigliatti - BMC genomics, 2015 - Springer
Background Increasingly high amounts of heterogeneous and valuable controlled
biomolecular annotations are available, but far from exhaustive and scattered in many …

FFcPsA: a fast finite conventional state using prefix pattern gene search algorithm for large sequence identification

A Surendar, M Arun, A Mahabub Basha - Soft Computing, 2019 - Springer
Gnomic information continues to flood, and this trend comes in the wake of the life sciences'
rapid development. The eventuality has been an increase in the demand for more scalable …

Validation pipeline for computational prediction of Genomics annotations

D Chicco, M Masseroli - … Methods for Bioinformatics and Biostatistics: 12th …, 2016 - Springer
Controlled biomolecular annotations are key concepts in computational genomics and
proteomics, since they can describe the functional features of genes and their products in …

[PDF][PDF] Querying Brazilian Educational Open Data using a Hybrid NLP-based Approach.

M Antoni, AS Charao, MH Franciscatto - ICEIS (2), 2021 - academia.edu
The need for capturing information suitable to the user has favored the development of
Question Answering (QA) systems, whose main goal is retrieving a precise answer to a …