Bacterial RNA biology on a genome scale

J Hör, SA Gorski, J Vogel - Molecular cell, 2018 - cell.com
Bacteria are an exceedingly diverse group of organisms whose molecular exploration is
experiencing a renaissance. While the classical view of bacterial gene expression was …

A systems-level mass spectrometry-based technique for accurate and sensitive quantification of the RNA cap epitranscriptome

J Wang, BLA Chew, Y Lai, H Dong, L Xu, Y Liu… - Nature …, 2023 - nature.com
Chemical modifications of transcripts with a 5′ cap occur in all organisms and function in
many aspects of RNA metabolism. To facilitate analysis of RNA caps, we developed a …

Quantifying the RNA cap epitranscriptome reveals novel caps in cellular and viral RNA

J Wang, BL Alvin Chew, Y Lai, H Dong… - Nucleic acids …, 2019 - academic.oup.com
Chemical modification of transcripts with 5′ caps occurs in all organisms. Here, we report a
systems-level mass spectrometry-based technique, CapQuant, for quantitative analysis of an …

The mechanism of RNA 5′ capping with NAD+, NADH and desphospho-CoA

JG Bird, Y Zhang, Y Tian, N Panova, I Barvík, L Greene… - Nature, 2016 - nature.com
The chemical nature of the 5′ end of RNA is a key determinant of RNA stability, processing,
localization and translation efficiency,, and has been proposed to provide a layer of …

Highly efficient 5' capping of mitochondrial RNA with NAD+ and NADH by yeast and human mitochondrial RNA polymerase

JG Bird, U Basu, D Kuster, A Ramachandran… - Elife, 2018 - elifesciences.org
Bacterial and eukaryotic nuclear RNA polymerases (RNAPs) cap RNA with the oxidized and
reduced forms of the metabolic effector nicotinamide adenine dinucleotide, NAD+ and …

Eukaryotic RNA 5′-end NAD+ capping and DeNADding

M Kiledjian - Trends in cell biology, 2018 - cell.com
A hallmark of eukaryotic mRNAs has long been the 5′-end m 7 G cap. This paradigm was
recently amended by recent reports that Saccharomyces cerevisiae and mammalian cells …

Identification, biosynthesis, and decapping of NAD-capped RNAs in B. subtilis

J Frindert, Y Zhang, G Nübel, M Kahloon, L Kolmar… - Cell Reports, 2018 - cell.com
The ubiquitous coenzyme nicotinamide adenine dinucleotide (NAD) decorates various
RNAs in different organisms. In the proteobacterium Escherichia coli, the NAD-cap confers …

Latest development on RNA-based drugs and vaccines

K Lundstrom - Future science OA, 2018 - Taylor & Francis
Drugs and vaccines based on mRNA and RNA viruses show great potential and direct
translation in the cytoplasm eliminates chromosomal integration. Limitations are associated …

Recent advances in modified cap analogs: synthesis, biochemical properties, and mRNA based vaccines

M Shanmugasundaram, A Senthilvelan… - The Chemical …, 2022 - Wiley Online Library
The recent FDA approval of the mRNA vaccine for severe acute respiratory syndrome
coronavirus (SARS‐CoV‐2) emphasizes the importance of mRNA as a powerful tool for …

[PDF][PDF] Confronting the catalytic dark matter encoded by sequenced genomes

KW Ellens, N Christian, C Singh… - Nucleic acids …, 2017 - academic.oup.com
The post-genomic era has provided researchers with a deluge of protein sequences.
However, a significant fraction of the proteins encoded by sequenced genomes remains …