Using machine learning approaches for multi-omics data analysis: A review

PS Reel, S Reel, E Pearson, E Trucco… - Biotechnology advances, 2021 - Elsevier
With the development of modern high-throughput omic measurement platforms, it has
become essential for biomedical studies to undertake an integrative (combined) approach to …

[HTML][HTML] Living things are not (20th century) machines: updating mechanism metaphors in light of the modern science of machine behavior

J Bongard, M Levin - Frontiers in Ecology and Evolution, 2021 - frontiersin.org
One of the most useful metaphors for driving scientific and engineering progress has been
that of the “machine”. Much controversy exists about the applicability of this concept in the …

Discrepancy between mRNA and protein abundance: insight from information retrieval process in computers

D Wang - Computational biology and chemistry, 2008 - Elsevier
Discrepancy between the abundance of cognate protein and RNA molecules is frequently
observed. A theoretical understanding of this discrepancy remains elusive, and it is …

The Enrichment of miRNA-Targeted mRNAs in Translationally Less Active over More Active Polysomes

T Wang, S Tian, EB Tikhonova, AL Karamyshev… - Biology, 2023 - mdpi.com
Simple Summary MicroRNAs (miRNA) inhibit the translation and enhance the degradation
of their target mRNAs, but only moderately. Paradoxically, miRNAs and their target mRNAs …

A comparative approach for the investigation of biological information processing: An examination of the structure and function of computer hard drives and DNA

DJ D'Onofrio, G An - Theoretical Biology and Medical Modelling, 2010 - Springer
Background The robust storage, updating and utilization of information are necessary for the
maintenance and perpetuation of dynamic systems. These systems can exist as constructs …

Uncovering the cellular capacity for intensive and specific feedback self-control of the argonautes and MicroRNA targeting activity

D Wang, T Wang, A Gill, T Hilliard, F Chen… - Nucleic acids …, 2020 - academic.oup.com
The miRNA pathway has three segments—biogenesis, targeting and downstream regulatory
effectors. We aimed to better understand their cellular control by exploring the miRNA …

Future microsystems for information processing: Limits and lessons from the living systems

VV Zhirnov, RK Cavin - IEEE Journal of the Electron Devices …, 2013 - ieeexplore.ieee.org
The paper examines the impact of the physics of extremely scaled information processing
devices and systems, with a focus on energy minimization. Architectural implications are …

[PDF][PDF] A DNA computing approach to solve Task Assignment problem in Real Time Distributed computing System

AA Ekka, B Sahoo - 2007 - academia.edu
Early attention has focused on DNA because its properties are extremely attractive as a
basis for a computational system. In this paper, we have proposed a new framework for …

Unifying Gene Expression Complexity and Cellular Operational Efficiency: Application of the Locality and Caching Principles via a Cell-to-Computer Analogy

W Jiang, D Feliers, WJ Zheng, F Zhang, D Wang - bioRxiv, 2022 - biorxiv.org
Gene expression is time-consuming, and the delay from transcription activation to produced
proteins is sequentially longer from bacteria to yeast and to humans. How human cells …

Engineering approaches toward biological information integration at the systems level

WJ Zheng - Current Bioinformatics, 2006 - ingentaconnect.com
Our understanding of biological systems has improved dramatically due to decades of
exploration. This process has been accelerated even further during the past ten years …