Defining and quantifying the core microbiome: challenges and prospects
AT Neu, EE Allen, K Roy - Proceedings of the National …, 2021 - National Acad Sciences
The term “core microbiome” has become widely used in microbial ecology over the last
decade. Broadly, the core microbiome refers to any set of microbial taxa, or the genomic and …
decade. Broadly, the core microbiome refers to any set of microbial taxa, or the genomic and …
Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
[HTML][HTML] A conceptual guide to measuring species diversity
Three metrics of species diversity–species richness, the Shannon index and the Simpson
index–are still widely used in ecology, despite decades of valid critiques leveled against …
index–are still widely used in ecology, despite decades of valid critiques leveled against …
Current levels of microplastic pollution impact wild seabird gut microbiomes
Microplastics contaminate environments worldwide and are ingested by numerous species,
whose health is affected in multiple ways. A key dimension of health that may be affected is …
whose health is affected in multiple ways. A key dimension of health that may be affected is …
Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …
[图书][B] A practical guide to DNA-based methods for biodiversity assessment.
This book represents a synthesis of knowledge and best practice in the field of DNA-based
biomonitoring at the time of writing. It has been written with end-users of molecular tools in …
biomonitoring at the time of writing. It has been written with end-users of molecular tools in …
Salmon gut microbiota correlates with disease infection status: potential for monitoring health in farmed animals
D Bozzi, JA Rasmussen, C Carøe, H Sveier… - Animal microbiome, 2021 - Springer
Background Infectious diseases cause significant production losses in aquaculture every
year. Since the gut microbiota plays an essential role in regulating the host immune system …
year. Since the gut microbiota plays an essential role in regulating the host immune system …
Environmental DNA captures native and non-native fish community variations across the lentic and lotic systems of a megacity
Globally, urbanization poses a major threat to terrestrial biodiversity, yet its impact on fish
diversity is poorly understood, mainly because of surveying difficulties. In this study …
diversity is poorly understood, mainly because of surveying difficulties. In this study …
Diversity and compositional changes in the gut microbiota of wild and captive vertebrates: a meta-analysis
The gut microbiota is recognised as an essential asset for the normal functioning of animal
biology. When wild animals are moved into captivity, the modified environmental pressures …
biology. When wild animals are moved into captivity, the modified environmental pressures …
A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)
Background Animal protein production is increasingly looking towards microbiome-
associated services such as the design of new and better probiotic solutions to further …
associated services such as the design of new and better probiotic solutions to further …