Heterochromatin definition and function

O Bell, A Burton, C Dean, SM Gasser… - … Reviews Molecular Cell …, 2023 - nature.com
Heterochromatin is a key characteristic of eukaryotic genomes. Since its cytological
description nearly 100 years ago, our understanding of heterochromatin features and …

4D epigenomics: deciphering the coupling between genome folding and epigenomic regulation with biophysical modeling

AZ Abdulla, H Salari, MMC Tortora, C Vaillant… - Current Opinion in …, 2023 - Elsevier
Recent experimental observations suggest a strong coupling between the 3D nuclear
chromosome organization and epigenomics. However, the mechanistic and functional …

Design principles of 3D epigenetic memory systems

JA Owen, D Osmanović, L Mirny - Science, 2023 - science.org
Cells remember their identities, in part, by using epigenetic marks—chemical modifications
placed along the genome. How can mark patterns remain stable over cell generations …

[HTML][HTML] Reversible, tunable epigenetic silencing of TCF1 generates flexibility in the T cell memory decision

K Abadie, EC Clark, RM Valanparambil, O Ukogu… - Immunity, 2024 - cell.com
The immune system encodes information about the severity of a pathogenic threat in the
quantity and type of memory cells it forms. This encoding emerges from lymphocyte …

Proximal termination generates a transcriptional state that determines the rate of establishment of Polycomb silencing

G Menon, E Mateo-Bonmati, S Reeck, R Maple, Z Wu… - Molecular Cell, 2024 - cell.com
The mechanisms and timescales controlling de novo establishment of chromatin-mediated
transcriptional silencing by Polycomb repressive complex 2 (PRC2) are unclear. Here, we …

[HTML][HTML] Head-to-tail polymerization by VEL proteins underpins cold-induced Polycomb silencing in flowering control

M Fiedler, E Franco-Echevarría, A Schulten, M Nielsen… - Cell reports, 2022 - cell.com
Transcriptional silencing through the Polycomb silencing machinery utilizes a" read-write"
mechanism involving histone tail modifications. However, nucleation of silencing and long …

Distinct accessory roles of Arabidopsis VEL proteins in Polycomb silencing

E Franco-Echevarría, M Nielsen… - Genes & …, 2023 - genesdev.cshlp.org
Abstract Polycomb repressive complex 2 (PRC2) mediates epigenetic silencing of target
genes in animals and plants. In Arabidopsis, PRC2 is required for the cold-induced …

Slowest possible replicative life at frigid temperatures for yeast

DS Laman Trip, T Maire, H Youk - Nature Communications, 2022 - nature.com
Determining whether life can progress arbitrarily slowly may reveal fundamental barriers to
staying out of thermal equilibrium for living systems. By monitoring budding yeast's slowed …

Dissecting Mechanisms of Epigenetic Memory Through Computational Modeling

A Briffa, G Menon… - Annual Review of …, 2024 - annualreviews.org
Understanding the mechanistic basis of epigenetic memory has proven to be a difficult task
due to the underlying complexity of the systems involved in its establishment and …

The transcription factor Atf1 lowers the transition barrier for nucleosome-mediated establishment of heterochromatin

JF Nickels, ME Della-Rosa, IM Goyeneche, SJ Charlton… - Cell reports, 2022 - cell.com
Transcription factors can exert opposite effects depending on the chromosomal context. The
fission yeast transcription factor Atf1 both activates numerous genes in response to stresses …