Essay: Collections of deformable particles present exciting challenges for soft matter and biological physics

ML Manning - Physical Review Letters, 2023 - APS
The field of soft matter physics has expanded rapidly over the past several decades, as
physicists realize that a broad set of materials and systems are amenable to a physical …

Rigidity transition of a highly compressible granular medium

S Poincloux, KA Takeuchi - Proceedings of the National Academy of …, 2024 - pnas.org
A wide range of disordered materials, from biological to geological assemblies, feature
discrete elements undergoing large shape changes. How significant geometrical variations …

A soft departure from jamming: the compaction of deformable granular matter under high pressures

JT Clemmer, JM Monti, JB Lechman - Soft Matter, 2024 - pubs.rsc.org
The high-pressure compaction of three dimensional granular packings is simulated using a
bonded particle model (BPM) to capture linear elastic deformation. In the model, grains are …

[HTML][HTML] PolyHoop: soft particle and tissue dynamics with topological transitions

R Vetter, SVM Runser, D Iber - Computer Physics Communications, 2024 - Elsevier
We present PolyHoop, a lightweight standalone C++ implementation of a mechanical model
to simulate the dynamics of soft particles and cellular tissues in two dimensions. With only …

Localized growth and remodelling drives spongy mesophyll morphogenesis

JD Treado, AB Roddy… - Journal of the …, 2022 - royalsocietypublishing.org
The spongy mesophyll is a complex, porous tissue found in plant leaves that enables carbon
capture and provides mechanical stability. Unlike many other biological tissues, which …

Softer than soft: Diving into squishy granular matter

J Barés, M Cárdenas-Barrantes, D Cantor… - Papers in …, 2022 - papersinphysics.org
Softer than soft, squishy granular matter is composed of grains capable of significantly
changing their shape (typically a deformation larger than 10%) without tearing or breaking …

Explicit total Lagrangian material point method with implicit frictional-contact model for soft granular materials

S Nezamabadi, F Radjai - Granular Matter, 2024 - Springer
We introduce a novel numerical method for the simulation of soft granular materials, in which
the particles can undergo large strains under load without rupture. The proposed approach …

Hopper flows of deformable particles

Y Cheng, JD Treado, BF Lonial, P Habdas, ER Weeks… - Soft Matter, 2022 - pubs.rsc.org
Numerous experimental and computational studies show that continuous hopper flows of
granular materials obey the Beverloo equation that relates the volume flow rate Q and the …

Effect of electrostatic interaction on impact breakage of agglomerates formed by charged dielectric particles

X Ruan, S Li - Physical Review E, 2022 - APS
In this paper, the prototypical process of the normal impact of dense agglomerates is
investigated using the discrete element method–boundary element method coupled …

SimuCell3D: three-dimensional simulation of tissue mechanics with cell polarization

S Runser, R Vetter, D Iber - Nature Computational Science, 2024 - nature.com
Abstract The three-dimensional (3D) organization of cells determines tissue function and
integrity, and changes markedly in development and disease. Cell-based simulations have …