CH/π interactions in carbohydrate recognition

V Spiwok - Molecules, 2017 - mdpi.com
Many carbohydrate-binding proteins contain aromatic amino acid residues in their binding
sites. These residues interact with carbohydrates in a stacking geometry via CH/π …

CH/π interactions

S Tsuzuki - Annual Reports Section" C"(Physical Chemistry), 2012 - pubs.rsc.org
Recent gas phase measurements and high level ab initio calculations of the CH/π
interactions show that the nature of the CH/π interactions is significantly different from …

Modelling of graphene functionalization

M Pykal, P Jurečka, F Karlický… - Physical Chemistry …, 2016 - pubs.rsc.org
Graphene has attracted great interest because of its remarkable properties and numerous
potential applications. A comprehensive understanding of its structural and dynamic …

DNA–protein π-interactions in nature: abundance, structure, composition and strength of contacts between aromatic amino acids and DNA nucleobases or …

KA Wilson, JL Kellie, SD Wetmore - Nucleic acids research, 2014 - academic.oup.com
Four hundred twenty-eight high-resolution DNA–protein complexes were chosen for a
bioinformatics study. Although 164 crystal structures (38% of those searched) contained no …

Substituent effects on non‐covalent interactions with aromatic rings: Insights from computational chemistry

RK Raju, JWG Bloom, Y An, SE Wheeler - ChemPhysChem, 2011 - Wiley Online Library
Non‐covalent interactions with aromatic rings pervade modern chemical research. The
strength and orientation of these interactions can be tuned and controlled through …

Amino acid analogues bind to carbon nanotube via π-π interactions: Comparison of molecular mechanical and quantum mechanical calculations

Z Yang, Z Wang, X Tian, P Xiu, R Zhou - The Journal of chemical …, 2012 - pubs.aip.org
Understanding the interaction between carbon nanotubes (CNTs) and biomolecules is
essential to the CNT-based nanotechnology and biotechnology. Some recent experiments …

The CH–π interaction in protein–carbohydrate binding: bioinformatics and in vitro quantification

J Houser, S Kozmon, D Mishra… - … A European Journal, 2020 - Wiley Online Library
The molecular recognition of carbohydrates by proteins plays a key role in many biological
processes including immune response, pathogen entry into a cell, and cell–cell adhesion …

[HTML][HTML] Enhanced semiempirical QM methods for biomolecular interactions

ND Yilmazer, M Korth - Computational and structural biotechnology journal, 2015 - Elsevier
Recent successes and failures of the application of 'enhanced'semiempirical QM (SQM)
methods are reviewed in the light of the benefits and backdraws of adding dispersion (D) …

Empirically corrected DFT and semi-empirical methods for non-bonding interactions

ME Foster, K Sohlberg - Physical chemistry chemical physics, 2010 - pubs.rsc.org
Computational modeling of systems governed by non-bonded interactions, especially van
der Waals (dispersion) interactions, is currently a difficult task, since many conventional …

Stacking interactions between carbohydrate and protein quantified by combination of theoretical and experimental methods

M Wimmerová, S Kozmon, I Nečasová, SK Mishra… - 2012 - journals.plos.org
Carbohydrate–receptor interactions are an integral part of biological events. They play an
important role in many cellular processes, such as cell-cell adhesion, cell differentiation and …