HIV-1 drug resistance and resistance testing

DS Clutter, MR Jordan, S Bertagnolio… - Infection, Genetics and …, 2016 - Elsevier
The global scale-up of antiretroviral (ARV) therapy (ART) has led to dramatic reductions in
HIV-1 mortality and incidence. However, HIV drug resistance (HIVDR) poses a potential …

COMET: adaptive context-based modeling for ultrafast HIV-1 subtype identification

D Struck, G Lawyer, AM Ternes, JC Schmit… - Nucleic acids …, 2014 - academic.oup.com
Viral sequence classification has wide applications in clinical, epidemiological, structural
and functional categorization studies. Most existing approaches rely on an initial alignment …

[HTML][HTML] HIV drug resistance following a decade of the free antiretroviral therapy programme in India: a review

S Karade, DN Chaturbhuj, S Sen, RK Joshi… - International Journal of …, 2018 - Elsevier
Objective The objective of this review was to assess the burden of HIV drug resistance
mutations (DRM) in Indian adults exposed to first-line antiretroviral therapy (ART) as per …

VIRULIGN: fast codon-correct alignment and annotation of viral genomes

PJK Libin, K Deforche, AB Abecasis, K Theys - Bioinformatics, 2019 - academic.oup.com
Virus sequence data are an essential resource for reconstructing spatiotemporal dynamics
of viral spread as well as to inform treatment and prevention strategies. However, the …

HIV-1 antiretroviral drug resistance patterns in patients failing NNRTI-based treatment: results from a national survey in South Africa

K Steegen, M Bronze… - Journal of …, 2016 - academic.oup.com
Background Routine HIV-1 antiretroviral drug resistance testing for patients failing NNRTI-
based regimens is not recommended in resource-limited settings. Therefore, surveys are …

HIV transmission dynamics and population-wide drug resistance in rural South Africa

SA Kemp, K Kamelian, DF Cuadros… - Nature …, 2024 - nature.com
Despite expanded antiretroviral therapy (ART) in South Africa, HIV-1 transmission persists.
Integrase strand transfer inhibitors (INSTI) and long-acting injectables offer potential for …

High-levels of acquired drug resistance in adult patients failing first-line antiretroviral therapy in a rural HIV treatment programme in KwaZulu-Natal, South Africa

J Manasa, RJ Lessells, A Skingsley, KK Naidu… - PloS one, 2013 - journals.plos.org
Objective To determine the frequency and patterns of acquired antiretroviral drug resistance
in a rural primary health care programme in South Africa. Design Cross-sectional study …

High prevalence of the K65R mutation in HIV-1 subtype C infected patients failing tenofovir-based first-line regimens in South Africa

L Skhosana, K Steegen, M Bronze, A Lukhwareni… - PloS one, 2015 - journals.plos.org
Background Tenofovir (TDF) has replaced stavudine (d4T) as the preferred nucleoside
reverse transcriptase inhibitor (NRTI) in first-line regimens in South Africa, but limited …

Cohort profile: a European multidisciplinary network for the fight against HIV drug resistance (Euresist network)

B Rossetti, F Incardona, G Di Teodoro… - Tropical Medicine and …, 2023 - mdpi.com
The EuResist cohort was established in 2006 with the purpose of developing a clinical
decision-support tool predicting the most effective antiretroviral therapy (ART) for persons …

Treatment failure and drug resistance in HIV‐positive patients on tenofovir‐based first‐line antiretroviral therapy in western Kenya

K Brooks, L Diero, A DeLong… - Journal of the …, 2016 - Wiley Online Library
Introduction Tenofovir‐based first‐line antiretroviral therapy (ART) is recommended globally.
To evaluate the impact of its incorporation into the World Health Organization (WHO) …