Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

Network pharmacology: a new approach for Chinese herbal medicine research

G Zhang, Q Li, Q Chen, S Su - … ‐Based Complementary and …, 2013 - Wiley Online Library
The dominant paradigm of “one gene, one target, one disease” has influenced many
aspects of drug discovery strategy. However, in recent years, it has been appreciated that …

[HTML][HTML] Key role of lipids in heat stress management

G Balogh, M Péter, A Glatz, I Gombos, Z Török… - FEBS letters, 2013 - Elsevier
Heat stress is a common and, therefore, an important environmental impact on cells and
organisms. While much attention has been paid to severe heat stress, moderate temperature …

SignaLink 2–a signaling pathway resource with multi-layered regulatory networks

D Fazekas, M Koltai, D Türei, D Módos, M Pálfy… - BMC systems …, 2013 - Springer
Background Signaling networks in eukaryotes are made up of upstream and downstream
subnetworks. The upstream subnetwork contains the intertwined network of signaling …

Allo-network drugs: harnessing allostery in cellular networks

R Nussinov, CJ Tsai, P Csermely - Trends in pharmacological sciences, 2011 - cell.com
Allosteric drugs are increasingly used because they produce fewer side effects. Allosteric
signal propagation does not stop at the 'end'of a protein, but may be dynamically transmitted …

Portfolio optimization based on network topology

Y Li, XF Jiang, Y Tian, SP Li, B Zheng - Physica A: Statistical Mechanics …, 2019 - Elsevier
The structure and dynamics of complex network systems are of current research interest. We
illustrate the dependency between the network topology and its function, considering the …

In silico methods for identification of potential therapeutic targets

X Zhang, F Wu, N Yang, X Zhan, J Liao, S Mai… - Interdisciplinary …, 2022 - Springer
At the initial stage of drug discovery, identifying novel targets with maximal efficacy and
minimal side effects can improve the success rate and portfolio value of drug discovery …

Complex regulation of autophagy in cancer–Integrated approaches to discover the networks that hold a double-edged sword

J Kubisch, D Türei, L Földvári-Nagy, ZA Dunai… - Seminars in cancer …, 2013 - Elsevier
Autophagy, a highly regulated self-degradation process of eukaryotic cells, is a context-
dependent tumor-suppressing mechanism that can also promote tumor cell survival upon …

Controlling directed protein interaction networks in cancer

K Kanhaiya, E Czeizler, C Gratie, I Petre - Scientific reports, 2017 - nature.com
Control theory is a well-established approach in network science, with applications in bio-
medicine and cancer research. We build on recent results for structural controllability of …

Polypharmacology-based ceritinib repurposing using integrated functional proteomics

BM Kuenzi, LL Remsing Rix, PA Stewart… - Nature chemical …, 2017 - nature.com
Targeted drugs are effective when they directly inhibit strong disease drivers, but only a
small fraction of diseases feature defined actionable drivers. Alternatively, network-based …