MS-GF+ makes progress towards a universal database search tool for proteomics

S Kim, PA Pevzner - Nature communications, 2014 - nature.com
Mass spectrometry (MS) instruments and experimental protocols are rapidly advancing, but
the software tools to analyse tandem mass spectra are lagging behind. We present a …

An evolutionarily conserved pathway controls proteasome homeostasis

A Rousseau, A Bertolotti - Nature, 2016 - nature.com
The proteasome is essential for the selective degradation of most cellular proteins, but how
cells maintain adequate amounts of proteasome is unclear. Here we show that there is an …

The Red Seaweed Gracilaria gracilis as a Multi Products Source

M Francavilla, M Franchi, M Monteleone, C Caroppo - Marine drugs, 2013 - mdpi.com
In recent years seaweeds have increasingly attracted interest in the search for new drugs
and have been shown to be a primary source of bioactive natural compounds and …

Translation elongation can control translation initiation on eukaryotic mRNA s

D Chu, E Kazana, N Bellanger, T Singh, MF Tuite… - The EMBO …, 2014 - embopress.org
Synonymous codons encode the same amino acid, but differ in other biophysical properties.
The evolutionary selection of codons whose properties are optimal for a cell generates the …

Dynamic control of the high-affinity iron uptake complex in root epidermal cells

A Martín-Barranco, J Spielmann, G Dubeaux… - Plant …, 2020 - academic.oup.com
In plants, iron uptake from the soil is tightly regulated to ensure optimal growth and
development. Iron absorption in Arabidopsis root epidermal cells requires the IRT1 …

Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila

ML Urbanus, AT Quaile, PJ Stogios… - Molecular systems …, 2016 - embopress.org
Pathogens deliver complex arsenals of translocated effector proteins to host cells during
infection, but the extent to which these proteins are regulated once inside the eukaryotic cell …

Eukaryotic Pif1 helicase unwinds G-quadruplex and dsDNA using a conserved wedge

Z Hong, AK Byrd, J Gao, P Das, VQ Tan… - Nature …, 2024 - nature.com
Abstract G-quadruplexes (G4s) formed by guanine-rich nucleic acids induce genome
instability through impeding DNA replication fork progression. G4s are stable DNA …

Hyperplexing: a method for higher-order multiplexed quantitative proteomics provides a map of the dynamic response to rapamycin in yeast

N Dephoure, SP Gygi - Science signaling, 2012 - science.org
Large-scale quantitative proteomics can provide a near-global view of cellular protein
abundance. Yet, the time, effort, and expertise required to achieve reasonable protein …

Ncs2* mediates in vivo virulence of pathogenic yeast through sulphur modification of cytoplasmic transfer RNA

F Alings, K Scharmann, C Eggers… - Nucleic acids …, 2023 - academic.oup.com
Fungal pathogens threaten ecosystems and human health. Understanding the molecular
basis of their virulence is key to develop new treatment strategies. Here, we characterize …

Cardiolipin remodeling enables protein crowding in the inner mitochondrial membrane

Y Xu, H Erdjument‐Bromage, CKL Phoon… - The EMBO …, 2021 - embopress.org
Mitochondrial cristae are extraordinarily crowded with proteins, which puts stress on the
bilayer organization of lipids. We tested the hypothesis that the high concentration of …