RIPK protein kinase family: Atypical lives of typical kinases

GD Cuny, A Degterev - Seminars in cell & developmental biology, 2021 - Elsevier
Abstract Receptor Interacting Protein Kinases (RIPKs) are a family of Ser/Thr/Tyr kinases
whose functions, regulation and pathophysiologic roles have remained an enigma for a long …

ATP-binding and hydrolysis in inflammasome activation

CF Sandall, BK Ziehr, JA MacDonald - Molecules, 2020 - mdpi.com
The prototypical model for NOD-like receptor (NLR) inflammasome assembly includes
nucleotide-dependent activation of the NLR downstream of pathogen-or danger-associated …

Structural basis of RIP2 activation and signaling

Q Gong, Z Long, FL Zhong, DET Teo, Y Jin… - Nature …, 2018 - nature.com
Signals arising from bacterial infections are detected by pathogen recognition receptors
(PRRs) and are transduced by specialized adapter proteins in mammalian cells. The …

[HTML][HTML] Ubiquitination regulation of inflammatory responses through NF-κB pathway

Y Wu, J Kang, L Zhang, Z Liang, X Tang… - American Journal of …, 2018 - ncbi.nlm.nih.gov
The development of inflammation is mutually affected with damaged DNA and the abnormal
expression of protein modification. Ubiquitination, a way of protein modification, plays a key …

Deciphering the ATP-binding mechanism (s) in NLRP-NACHT 3D models using structural bioinformatics approaches

J Maharana, D Panda, S De - PLoS One, 2018 - journals.plos.org
Nucleotide-binding and oligomerization domain (NOD)-like receptors (NLRs), the first line of
defense, are the cytosolic pattern recognition receptors (PRRs) that regulate the …

XIAP controls RIPK2 signaling by preventing its deposition in speck-like structures

K Ellwanger, S Briese, C Arnold, I Kienes… - Life Science …, 2019 - life-science-alliance.org
The receptor interacting serine/threonine kinase 2 (RIPK2) is essential for linking activation
of the pattern recognition receptors NOD1 and NOD2 to cellular signaling events. Recently …

Structural elucidation of inter-CARD interfaces involved in NOD2 tandem CARD association and RIP2 recognition

J Maharana, D Maharana, A Bej… - The Journal of …, 2021 - ACS Publications
Nucleotide-binding and oligomerization domain-containing protein 2 (NOD2) recognizes the
muramyl dipeptide and activates the NF-κB signaling cascade following its interaction with …

Exploring the structural assembly of rice ADP-glucose pyrophosphorylase subunits using MD simulation

J Maharana, SK Hwang, DL Singha, D Panda… - Journal of Molecular …, 2024 - Elsevier
ADP-glucose pyrophosphorylase plays a pivotal role as an allosteric enzyme, essential for
starch biosynthesis in plants. The higher plant AGPase comparises of a pair of large and a …

Understanding a point mutation signature D54K in the caspase activation recruitment domain of NOD1 capitulating concerted immunity via atomistic simulation

P Raghuraman, S Ramireddy, G Raman… - Journal of …, 2024 - Taylor & Francis
Point mutation D54K in the human N-terminal caspase recruitment domain (CARD) of
nucleotide-binding oligomerization domain− 1 (NOD1) abrogates an imperative downstream …

Structural bioinformatics insights into the CARD‐CARD interaction mediated by the mitochondrial antiviral‐signaling protein of black carp

AK Rout, SR Udgata, B Dehury… - Journal of cellular …, 2019 - Wiley Online Library
The innate immune system offers the first line of defense against invading microbial
pathogens through the recognition of conserved pathogen‐associated molecular patterns …