Developmental bias and evolution: a regulatory network perspective

T Uller, AP Moczek, RA Watson, PM Brakefield… - Genetics, 2018 - academic.oup.com
A recurrent theme in evolutionary biology is to contrast natural selection and developmental
constraint–two forces pitted against each other as competing explanations for organismal …

How can evolution learn?

RA Watson, E Szathmáry - Trends in ecology & evolution, 2016 - cell.com
The theory of evolution links random variation and selection to incremental adaptation. In a
different intellectual domain, learning theory links incremental adaptation (eg, from positive …

Combinatorial assembly and design of enzymes

R Lipsh-Sokolik, O Khersonsky, SP Schröder… - Science, 2023 - science.org
The design of structurally diverse enzymes is constrained by long-range interactions that are
necessary for accurate folding. We introduce an atomistic and machine learning strategy for …

[图书][B] An introduction to systems biology: design principles of biological circuits

U Alon - 2019 - api.taylorfrancis.com
Praise for the first edition:… superb, beautifully written and organized work that takes an
engineering approach to systems biology. Alon provides nicely written appendices to …

[图书][B] The flexible phenotype: a body-centred integration of ecology, physiology, and behaviour

T Piersma, JA Van Gils - 2010 - books.google.com
The Flexible Phenotype attempts a true synthesis of physiology, behaviour, and ecology by
developing an empirical argument that describes the intimate connections between …

Learning to learn by using nonequilibrium training protocols for adaptable materials

MJ Falk, J Wu, A Matthews… - Proceedings of the …, 2023 - National Acad Sciences
Evolution in time-varying environments naturally leads to adaptable biological systems that
can easily switch functionalities. Advances in the synthesis of environmentally responsive …

Mutational robustness can facilitate adaptation

JA Draghi, TL Parsons, GP Wagner, JB Plotkin - Nature, 2010 - nature.com
Robustness seems to be the opposite of evolvability. If phenotypes are robust against
mutation, we might expect that a population will have difficulty adapting to an environmental …

Correlational selection in the age of genomics

EI Svensson, SJ Arnold, R Bürger, K Csilléry… - Nature ecology & …, 2021 - nature.com
Ecologists and evolutionary biologists are well aware that natural and sexual selection do
not operate on traits in isolation, but instead act on combinations of traits. This long …

Plastic responses to novel environments are biased towards phenotype dimensions with high additive genetic variation

DWA Noble, R Radersma… - Proceedings of the …, 2019 - National Acad Sciences
Environmentally induced phenotypes have been proposed to initiate and bias adaptive
evolutionary change toward particular directions. The potential for this to happen depends in …

The evolution of phenotypic correlations and “developmental memory”

RA Watson, GP Wagner, M Pavlicev, DM Weinreich… - …, 2014 - academic.oup.com
Abstract Development introduces structured correlations among traits that may constrain or
bias the distribution of phenotypes produced. Moreover, when suitable heritable variation …