DNA nanotechnology assisted nanopore-based analysis

T Ding, J Yang, V Pan, N Zhao, Z Lu, Y Ke… - Nucleic acids …, 2020 - academic.oup.com
Nanopore technology is a promising label-free detection method. However, challenges exist
for its further application in sequencing, clinical diagnostics and ultra-sensitive single …

De novo design of a nanopore for single-molecule detection that incorporates a β-hairpin peptide

K Shimizu, B Mijiddorj, M Usami, I Mizoguchi… - Nature …, 2022 - nature.com
The amino-acid sequence of a protein encodes information on its three-dimensional
structure and specific functionality. De novo design has emerged as a method to manipulate …

Biosensors based on DNA logic gates

F Yin, F Wang, C Fan, X Zuo, Q Li - View, 2021 - Wiley Online Library
Abstract Biosensor is a device that responds to a particular target in a selective way by
incorporation of biological recognition as sensing unit. For practical biomedical applications …

Analytical model for particle capture in nanopores elucidates competition among electrophoresis, electroosmosis, and dielectrophoresis

M Chinappi, M Yamaji, R Kawano, F Cecconi - ACS nano, 2020 - ACS Publications
The interaction between nanoparticles dispersed in a fluid and nanopores is governed by
the interplay of hydrodynamical, electrical, and chemical effects. We developed a theory for …

Cell-Free Expression of De Novo Designed Peptides That Form β-Barrel Nanopores

S Fujita, I Kawamura, R Kawano - Acs Nano, 2023 - ACS Publications
Nanopore sensing has attracted much attention as a rapid, simple, and label-free single-
molecule detection technology. To apply nanopore sensing to extensive targets including …

QuipuNet: convolutional neural network for single-molecule nanopore sensing

K Misiunas, N Ermann, UF Keyser - Nano letters, 2018 - ACS Publications
Nanopore sensing is a versatile technique for the analysis of molecules on the single-
molecule level. However, extracting information from data with established algorithms …

Pattern recognition of microRNA expression in body fluids using nanopore decoding at subfemtomolar concentrations

N Takeuchi, M Hiratani, R Kawano - JACS Au, 2022 - ACS Publications
This paper describes a method for detecting microRNA (miRNA) expression patterns using
the nanopore-based DNA computing technology. miRNAs have shown promise as markers …

DNA logic operation with nanopore decoding to recognize microRNA patterns in small cell lung cancer

M Hiratani, R Kawano - Analytical chemistry, 2018 - ACS Publications
Although DNA computation has traditionally been developed for parallel calculations in
molecular analyses, this approach has recently been considered for use in diagnostic or …

Simultaneous Recognition of Over-and Under-Expressed MicroRNAs Using Nanopore Decoding

S Takiguchi, F Kambara, M Tani, T Sugiura… - Analytical …, 2023 - ACS Publications
This paper describes a strategy for simultaneous recognition of over-and under-expressed
microRNAs (miRNAs) using the method of signal classification-based nanopore decoding …

Chemistry solutions to facilitate nanopore detection and analysis

L Wang, H Wang, X Chen, S Zhou, Y Wang… - Biosensors and …, 2022 - Elsevier
Characteristic ionic current modulations will be produced in a single molecule manner
during the communication of individual molecules with a nanopore. Hence, the information …