[HTML][HTML] Aquatic environmental DNA: A review of the macro-organismal biomonitoring revolution

M Takahashi, M Saccò, JH Kestel, G Nester… - Science of the Total …, 2023 - Elsevier
Environmental DNA (eDNA) is the fastest growing biomonitoring tool fuelled by two key
features: time efficiency and sensitivity. Technological advancements allow rapid …

Environmental DNA metabarcoding: A novel method for biodiversity monitoring of marine fish communities

M Miya - Annual Review of Marine Science, 2022 - annualreviews.org
Environmental DNA (eDNA) is genetic material that has been shed from macroorganisms. It
has received increased attention as an indirect marker for biodiversity monitoring. This …

Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward

M Yao, S Zhang, Q Lu, X Chen, SY Zhang… - Molecular …, 2022 - Wiley Online Library
Vast global declines of freshwater and marine fish diversity and population abundance pose
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …

Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses

F Keck, M Couton, F Altermatt - Molecular Ecology Resources, 2023 - Wiley Online Library
Assessment of biodiversity using metabarcoding data, such as from bulk or environmental
DNA sampling, is becoming increasingly relevant in ecology, biodiversity sciences and …

A comprehensive and comparative evaluation of primers for metabarcoding eDNA from fish

S Zhang, J Zhao, M Yao - Methods in Ecology and Evolution, 2020 - Wiley Online Library
Accurate assessments of fish species diversity and community composition are essential for
understanding fish ecology and conservation management. Environmental DNA (eDNA) …

Comparing environmental DNA metabarcoding and underwater visual census to monitor tropical reef fishes

A Polanco Fernández, V Marques, F Fopp… - Environmental …, 2021 - Wiley Online Library
Environmental DNA (eDNA) analysis is a revolutionary method to monitor marine
biodiversity from animal DNA traces. Examining the capacity of eDNA to provide accurate …

Large‐scale eDNA metabarcoding survey reveals marine biogeographic break and transitions over tropical north‐western Australia

K West, MJ Travers, M Stat, ES Harvey… - Diversity and …, 2021 - Wiley Online Library
Abstract Aim Environmental DNA (eDNA) metabarcoding has demonstrated its applicability
as a highly sensitive biomonitoring tool across small spatial and temporal scales in marine …

Integrating eDNA metabarcoding and simultaneous underwater visual surveys to describe complex fish communities in a marine biodiversity hotspot

T Valdivia‐Carrillo, A Rocha‐Olivares… - Molecular Ecology …, 2021 - Wiley Online Library
Marine biodiversity can be surveyed using underwater visual censuses and recently with
eDNA metabarcoding. Although a promising tool, eDNA studies have shown contrasting …

A national scale “BioBlitz” using citizen science and eDNA metabarcoding for monitoring coastal marine fish

S Agersnap, EE Sigsgaard, MR Jensen… - Frontiers in Marine …, 2022 - frontiersin.org
Marine biodiversity is threatened by human activities. To understand the changes
happening in aquatic ecosystems and to inform management, detailed, synoptic monitoring …

One size does not fit all: Tuning eDNA protocols for high‐and low‐turbidity water sampling

G Kumar, E Farrell, AM Reaume, JA Eble… - Environmental …, 2022 - Wiley Online Library
Findings from eDNA metabarcoding are strongly influenced by experimental approach, yet
the effect of pre‐PCR sample processing on taxon detection and estimates of biodiversity …