The two-speed genomes of filamentous pathogens: waltz with plants

S Dong, S Raffaele, S Kamoun - Current opinion in genetics & …, 2015 - Elsevier
Fungi and oomycetes include deep and diverse lineages of eukaryotic plant pathogens. The
last 10 years have seen the sequencing of the genomes of a multitude of species of these so …

Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names

NN Wijayawardene, PW Crous, PM Kirk… - Fungal Diversity, 2014 - Springer
Abstract Article 59.1, of the International Code of Nomenclature for Algae, Fungi, and Plants
(ICN; Melbourne Code), which addresses the nomenclature of pleomorphic fungi, became …

Prediction of effector protein structures from fungal phytopathogens enables evolutionary analyses

K Seong, KV Krasileva - Nature Microbiology, 2023 - nature.com
Elucidating the similarity and diversity of pathogen effectors is critical to understand their
evolution across fungal phytopathogens. However, rapid divergence that diminishes …

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

J Sperschneider, PN Dodds… - Molecular plant …, 2018 - Wiley Online Library
Plant‐pathogenic fungi secrete effector proteins to facilitate infection. We describe extensive
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …

EffectorP: predicting fungal effector proteins from secretomes using machine learning

J Sperschneider, DM Gardiner, PN Dodds… - New …, 2016 - Wiley Online Library
Eukaryotic filamentous plant pathogens secrete effector proteins that modulate the host cell
to facilitate infection. Computational effector candidate identification and subsequent …

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

RA Ohm, N Feau, B Henrissat, CL Schoch… - PLoS …, 2012 - journals.plos.org
The class Dothideomycetes is one of the largest groups of fungi with a high level of
ecological diversity including many plant pathogens infecting a broad range of hosts. Here …

Extracellular electron transfer systems fuel cellulose oxidative degradation

D Kracher, S Scheiblbrandner, AKG Felice… - Science, 2016 - science.org
Ninety percent of lignocellulose-degrading fungi contain genes encoding lytic
polysaccharide monooxygenases (LPMOs). These enzymes catalyze the initial oxidative …

ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning

J Sperschneider, PN Dodds, KB Singh… - New …, 2018 - Wiley Online Library
The plant apoplast is integral to intercellular signalling, transport and plant–pathogen
interactions. Plant pathogens deliver effectors both into the apoplast and inside host cells …

Adaptation to global change: a transposable element–epigenetics perspective

O Rey, E Danchin, M Mirouze, C Loot… - Trends in ecology & …, 2016 - cell.com
Understanding how organisms cope with global change is a major scientific challenge. The
molecular pathways underlying rapid adaptive phenotypic responses to global change …

The pangenome of the wheat pathogen Pyrenophora tritici-repentis reveals novel transposons associated with necrotrophic effectors ToxA and ToxB

R Gourlie, M McDonald, M Hafez, R Ortega-Polo… - BMC biology, 2022 - Springer
Background In fungal plant pathogens, genome rearrangements followed by selection
pressure for adaptive traits have facilitated the co-evolutionary arms race between hosts and …