[HTML][HTML] The ONIOM method and its applications

LW Chung, WMC Sameera, R Ramozzi… - Chemical …, 2015 - ACS Publications
The fields of theoretical and computational chemistry have come a long way since their
inception in the mid-20th century. Fifty years ago, only rudimentary approximations for very …

CH–π hydrogen bonds in biological macromolecules

M Nishio, Y Umezawa, J Fantini, MS Weiss… - Physical Chemistry …, 2014 - pubs.rsc.org
This is a sequel to the previous Perspective “The CH–π hydrogen bond in chemistry.
Conformation, supramolecules, optical resolution and interactions involving carbohydrates” …

Toward a more complete understanding of noncovalent interactions involving aromatic rings

SE Wheeler, JWG Bloom - The journal of physical chemistry A, 2014 - ACS Publications
Noncovalent interactions involving aromatic rings, which include π-stacking interactions,
anion-π interactions, and XH− π interactions, among others, are ubiquitous in chemical and …

[HTML][HTML] Enhanced semiempirical QM methods for biomolecular interactions

ND Yilmazer, M Korth - Computational and structural biotechnology journal, 2015 - Elsevier
Recent successes and failures of the application of 'enhanced'semiempirical QM (SQM)
methods are reviewed in the light of the benefits and backdraws of adding dispersion (D) …

Substituent effects on non‐covalent interactions with aromatic rings: Insights from computational chemistry

RK Raju, JWG Bloom, Y An, SE Wheeler - ChemPhysChem, 2011 - Wiley Online Library
Non‐covalent interactions with aromatic rings pervade modern chemical research. The
strength and orientation of these interactions can be tuned and controlled through …

Physical nature of substituent effects in XH/π interactions

JWG Bloom, RK Raju, SE Wheeler - Journal of chemical theory …, 2012 - ACS Publications
XH/π interactions (eg: CH/π, OH/π, etc.) are ubiquitous in chemical and biochemical
contexts. Although there have been many studies of substituent effects in XH/π interactions …

Tuning the C–H··· π interaction by different substitutions in benzene–acetylene complexes

BK Mishra, S Karthikeyan… - Journal of Chemical …, 2012 - ACS Publications
The influence of substitutions in aromatic moieties on the binding strength of their complexes
is a subject of broad importance. Using a set of various substituted benzenes, Sherrill and co …

Influence of the substituents on the CH... π interaction: benzene–methane complex

S Karthikeyan, V Ramanathan… - The Journal of Physical …, 2013 - ACS Publications
Recently we showed that the binding energy of the benzene... acetylene complex could be
tuned up to 5 kcal/mol by substituting the hydrogen atoms of the benzene molecule with …

A unified set of experimental organometallic data used to evaluate modern theoretical methods

RK Raju, AA Bengali, EN Brothers - Dalton Transactions, 2016 - pubs.rsc.org
We applied a test set of ligand dissociation enthalpies derived entirely from a unified
experimental approach to evaluate the efficacy of various methods for modeling …

Nonfitting protein–ligand interaction scoring function based on first‐principles theoretical chemistry methods: Development and application on kinase inhibitors

L Rao, IY Zhang, W Guo, L Feng… - Journal of …, 2013 - Wiley Online Library
Targeted therapy is currently a hot topic in the fields of cancer research and drug design. An
important requirement for this approach is the development of potent and selective inhibitors …