Super-pangenome by integrating the wild side of a species for accelerated crop improvement

AW Khan, V Garg, M Roorkiwal, AA Golicz… - Trends in plant …, 2020 - cell.com
The pangenome provides genomic variations in the cultivated gene pool for a given species.
However, as the crop's gene pool comprises many species, especially wild relatives with …

Genomic innovation for crop improvement

MW Bevan, C Uauy, BBH Wulff, J Zhou, K Krasileva… - Nature, 2017 - nature.com
Crop production needs to increase to secure future food supplies, while reducing its impact
on ecosystems. Detailed characterization of plant genomes and genetic diversity is crucial …

Eight high-quality genomes reveal pan-genome architecture and ecotype differentiation of Brassica napus

JM Song, Z Guan, J Hu, C Guo, Z Yang, S Wang, D Liu… - Nature plants, 2020 - nature.com
Rapeseed (Brassica napus) is the second most important oilseed crop in the world but the
genetic diversity underlying its massive phenotypic variations remains largely unexplored …

Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum

A Song, J Su, H Wang, Z Zhang, X Zhang… - Nature …, 2023 - nature.com
Abstract Chrysanthemum (Chrysanthemum morifolium Ramat.) is a globally important
ornamental plant with great economic, cultural, and symbolic value. However, research on …

Origin and evolution of the octoploid strawberry genome

PP Edger, TJ Poorten, R VanBuren, MA Hardigan… - Nature …, 2019 - nature.com
Cultivated strawberry emerged from the hybridization of two wild octoploid species, both
descendants from the merger of four diploid progenitor species into a single nucleus more …

BRAD V3. 0: an upgraded Brassicaceae database

H Chen, T Wang, X He, X Cai, R Lin… - Nucleic Acids …, 2022 - academic.oup.com
Abstract The Brassicaceae Database (BRAD version 3.0, BRAD V3. 0; http://brassicadb. cn)
has evolved from the former Brassica Database (BRAD V2. 0), and represents an important …

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

J Zhang, X Zhang, H Tang, Q Zhang, X Hua, X Ma… - Nature …, 2018 - nature.com
Modern sugarcanes are polyploid interspecific hybrids, combining high sugar content from
Saccharum officinarum with hardiness, disease resistance and ratooning of Saccharum …

Genomic selection and genetic architecture of agronomic traits during modern rapeseed breeding

J Hu, B Chen, J Zhao, F Zhang, T Xie, K Xu, G Gao… - Nature Genetics, 2022 - nature.com
Rapeseed (Brassica napus L.) is an important oil-producing crop for the world. Its
adaptation, yield and quality have been considerably improved in recent decades, but the …

agriGO v2. 0: a GO analysis toolkit for the agricultural community, 2017 update

T Tian, Y Liu, H Yan, Q You, X Yi, Z Du… - Nucleic acids …, 2017 - academic.oup.com
The agriGO platform, which has been serving the scientific community for> 10 years,
specifically focuses on gene ontology (GO) enrichment analyses of plant and agricultural …

Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps

C Belser, B Istace, E Denis, M Dubarry, FC Baurens… - Nature plants, 2018 - nature.com
Plant genomes are often characterized by a high level of repetitiveness and polyploid
nature. Consequently, creating genome assemblies for plant genomes is challenging. The …