Cryo-EM reveals active site coordination within a multienzyme pre-rRNA processing complex

MC Pillon, AL Hsu, JM Krahn, JG Williams… - Nature structural & …, 2019 - nature.com
Ribosome assembly is a complex process reliant on the coordination of trans-acting
enzymes to produce functional ribosomal subunits and secure the translational capacity of …

Real-time fluorescence assays to monitor duplex unwinding and ATPase activities of helicases

AR Özeş, K Feoktistova, BC Avanzino, EP Baldwin… - Nature protocols, 2014 - nature.com
Many physiological functions of helicases are dependent on their ability to unwind nucleic
acid duplexes in an ATP-dependent fashion. Determining the kinetic frameworks of these …

Rrp5 establishes a checkpoint for 60S assembly during 40S maturation

S Khoshnevis, X Liu, MD Dattolo, K Karbstein - Rna, 2019 - rnajournal.cshlp.org
Even though the RNAs contained in the small (40S) and large (60S) ribosomal subunits are
cotranscribed, their assembly proceeds largely separately, involving entirely distinct …

The Vasa Homolog RDE-12 engages target mRNA and multiple argonaute proteins to promote RNAi in C. elegans

M Shirayama, W Stanney, W Gu, M Seth, CC Mello - Current Biology, 2014 - cell.com
Argonaute (AGO) proteins are key nuclease effectors of RNAi [1]. Although purified AGOs
can mediate a single round of target RNA cleavage in vitro, accessory factors are required …

The Viral Protein K7 Inhibits Biochemical Activities and Condensate Formation by the DEAD-box Helicase DDX3X

S Venus, K Tandjigora, E Jankowsky - Journal of Molecular Biology, 2023 - Elsevier
The DEAD-box RNA helicase DDX3X promotes translation initiation and associates with
stress granules. A range of diverse viruses produce proteins that target DDX3X, including …

Measuring the impact of cofactors on RNA helicase activities

S Venus, E Jankowsky - Methods, 2022 - Elsevier
RNA helicases are the largest class of enzymes in eukaryotic RNA metabolism. In cells,
protein cofactors regulate RNA helicase functions and impact biochemical helicase …

Structural asymmetry does not indicate hemiphosphorylation in the bacterial histidine kinase CpxA

S Bouillet, T Wu, S Chen, AM Stock, R Gao - Journal of Biological Chemistry, 2020 - ASBMB
Histidine protein kinases (HKs) are prevalent prokaryotic sensor kinases that are central to
phosphotransfer in two-component signal transduction systems, regulating phosphorylation …

Measuring helicase inhibition of the DEAD-box protein Dbp2 by Yra1

WK Ma, EJ Tran - RNA Remodeling Proteins: Methods and Protocols, 2015 - Springer
Despite the highly conserved helicase core, individual DEAD-box proteins are specialized in
diverse RNA metabolic processes. One mechanism that determines DEAD-box protein …

[PDF][PDF] Insights into the regulation of RNA helicases by protein cofactors

I Memet - 2019 - core.ac.uk
RNA helicases comprise a large family of ubiquitously expressed enzymes that remodel
RNA structures and RNA-protein complexes in an NTP-dependent manner. These proteins …

Characterization of the function of the DEAD-box RNA helicase Dbp2

WK Ma - 2015 - search.proquest.com
In eukaryotes, there are highly coupled mechanisms that require RNA-binding proteins to
facilitate gene expression. Proper RNA structure and ribonucleoprotein (RNP) complex …