The urothelial gene regulatory network: understanding biology to improve bladder cancer management

M Ramal, S Corral, M Kalisz, E Lapi, FX Real - Oncogene, 2024 - nature.com
The urothelium is a stratified epithelium composed of basal cells, one or more layers of
intermediate cells, and an upper layer of differentiated umbrella cells. Most bladder cancers …

Chromatin structure in cancer

M Wang, BD Sunkel, WC Ray, BZ Stanton - BMC molecular and cell …, 2022 - Springer
In the past decade, we have seen the emergence of sequence-based methods to
understand chromosome organization. With the confluence of in situ approaches to capture …

Alterations of chromatin regulators in the pathogenesis of urinary bladder urothelial carcinoma

MJ Hoffmann, WA Schulz - Cancers, 2021 - mdpi.com
Simple Summary Urinary bladder cancer is one of the ten major cancers worldwide, with
higher incidences in males, in smokers, and in highly industrialized countries. New …

Epigenomic mapping identifies an enhancer repertoire that regulates cell identity in bladder cancer through distinct transcription factor networks

H Neyret-Kahn, J Fontugne, XY Meng, CS Groeneveld… - Oncogene, 2023 - nature.com
Muscle-invasive bladder cancer (BLCA) is an aggressive disease. Consensus BLCA
transcriptomic subtypes have been proposed, with two major Luminal and Basal subgroups …

The 3D genome and its impacts on human health and disease

S Wang, Z Luo, W Liu, T Hu, Z Zhao… - Life …, 2023 - academic.oup.com
Eukaryotic genomes are highly compacted in the cell nucleus. Two loci separated by a long
linear distance can be brought into proximity in space through DNA-binding proteins and …

Unveiling Alterations of Epigenetic Modifications and Chromatin Architecture Leading to Lipid Metabolic Reprogramming during the Evolutionary Trastuzumab …

N Duan, Y Hua, X Yan, Y He, T Zeng, J Gong… - Advanced …, 2024 - Wiley Online Library
Secondary trastuzumab resistance represents an evolutionary adaptation of HER2‐positive
breast cancer during anti‐HER2 treatment. Most current studies have tended to prioritize …

ARSD, a novel ERα downstream target gene, inhibits proliferation and migration of breast cancer cells via activating Hippo/YAP pathway

Y Lin, C Li, W Xiong, L Fan, H Pan, Y Li - Cell death & disease, 2021 - nature.com
Advanced breast cancer (BC), especially basal like triple-negative BC (TNBC), is a highly
malignant tumor without viable treatment option, highlighting the urgent need to seek novel …

Role of the Circadian Gas-Responsive Hemeprotein NPAS2 in Physiology and Pathology

E Murgo, T Colangelo, MM Bellet, F Malatesta… - Biology, 2023 - mdpi.com
Simple Summary NPAS2, short for Neuronal PAS Domain Protein 2, is a transcription factor
involved in regulating the circadian rhythms and sleep–wake cycles in mammals, including …

Roles of NPAS2 in circadian rhythm and disease

L Peng, G Bai, Y Pang - Acta Biochimica et Biophysica Sinica, 2021 - academic.oup.com
NPAS2, a circadian rhythm gene encoding the neuronal PAS domain protein 2 (NPAS2),
has received widespread attention because of its complex functions in cells and diverse …

3C methods in cancer research: recent advances and future prospects

I Yoon, U Kim, Y Song, T Park, DS Lee - Experimental & Molecular …, 2024 - nature.com
In recent years, Hi-C technology has revolutionized cancer research by elucidating the
mystery of three-dimensional chromatin organization and its role in gene regulation. This …