Spatial heterogeneity in the mammalian liver

S Ben-Moshe, S Itzkovitz - Nature reviews Gastroenterology & …, 2019 - nature.com
Hepatocytes operate in highly structured repeating anatomical units termed liver lobules.
Blood flow along the lobule radial axis creates gradients of oxygen, nutrients and hormones …

[HTML][HTML] Cytochrome P450 enzymes in drug metabolism: regulation of gene expression, enzyme activities, and impact of genetic variation

UM Zanger, M Schwab - Pharmacology & therapeutics, 2013 - Elsevier
Cytochromes P450 (CYP) are a major source of variability in drug pharmacokinetics and
response. Of 57 putatively functional human CYPs only about a dozen enzymes, belonging …

Recent advances in 2D and 3D in vitro systems using primary hepatocytes, alternative hepatocyte sources and non-parenchymal liver cells and their use in …

P Godoy, NJ Hewitt, U Albrecht, ME Andersen… - Archives of …, 2013 - Springer
This review encompasses the most important advances in liver functions and hepatotoxicity
and analyzes which mechanisms can be studied in vitro. In a complex architecture of nested …

Spatial sorting enables comprehensive characterization of liver zonation

S Ben-Moshe, Y Shapira, AE Moor, R Manco, T Veg… - Nature …, 2019 - nature.com
The mammalian liver is composed of repeating hexagonal units termed lobules. Spatially
resolved single-cell transcriptomics has revealed that about half of hepatocyte genes are …

Spatial transcriptomics: paving the way for tissue-level systems biology

AE Moor, S Itzkovitz - Current opinion in biotechnology, 2017 - Elsevier
Highlights•Cells in tissues operate in structured microenvironments.•Studying division of
labor in tissues requires spatially-resolved transcriptomics.•This is enabled by highly …

[HTML][HTML] Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery

DB Kell, R Goodacre - Drug Discovery Today, 2014 - Elsevier
Highlights•We now have metabolic network models; the metabolome is represented by their
nodes.•Metabolite levels are sensitive to changes in enzyme activities.•Drugs hitchhike on …

Omics and drug response

UA Meyer, UM Zanger, M Schwab - Annual review of …, 2013 - annualreviews.org
A new generation of technologies commonly named omics permits assessment of the
entirety of the components of biological systems and produces an explosion of data and a …

[HTML][HTML] A review of in silico toxicology approaches to support the safety assessment of cosmetics-related materials

MTD Cronin, SJ Enoch, JC Madden, JF Rathman… - Computational …, 2022 - Elsevier
In silico tools and resources are now used commonly in toxicology and to support the “Next
Generation Risk Assessment”(NGRA) of cosmetics ingredients or materials. This review …

[HTML][HTML] The zigzag model of plant–microbe interactions: is it time to move on?

L Pritchard, PRJ Birch - Molecular plant pathology, 2014 - ncbi.nlm.nih.gov
In 2006, Jones and Dangl proposed a simple coevolutionary model of plant–pathogen
interactions, called the 'zigzag'model, which encompasses two branches of the plant …

[PDF][PDF] Integrated metabolic spatial‐temporal model for the prediction of ammonia detoxification during liver damage and regeneration

F Schliess, S Hoehme, SG Henkel, A Ghallab… - …, 2014 - Wiley Online Library
The impairment of hepatic metabolism due to liver injury has high systemic relevance.
However, it is difficult to calculate the impairment of metabolic capacity from a specific …