Diversity and evolution of the animal virome

E Harvey, EC Holmes - Nature Reviews Microbiology, 2022 - nature.com
The COVID-19 pandemic has given the study of virus evolution and ecology new relevance.
Although viruses were first identified more than a century ago, we likely know less about …

Expanding the RNA virosphere by unbiased metagenomics

YZ Zhang, YM Chen, W Wang, XC Qin… - Annual Review of …, 2019 - annualreviews.org
Although viruses comprise the most abundant genetic material in the biosphere, to date only
several thousand virus species have been formally defined. Such a limited perspective on …

Using metagenomics to characterize an expanding virosphere

YZ Zhang, M Shi, EC Holmes - Cell, 2018 - cell.com
We know less about viruses than any other lifeform. Fortunately, metagenomics has led to a
massive expansion in the known diversity of the virosphere. Here, we discuss how …

A new segmented virus associated with human febrile illness in China

ZD Wang, B Wang, F Wei, SZ Han… - … England Journal of …, 2019 - Mass Medical Soc
Background In 2017, surveillance for tickborne diseases in China led to the identification of
a patient who presented to a hospital in Inner Mongolia with a febrile illness that had an …

High-resolution metatranscriptomics reveals the ecological dynamics of mosquito-associated RNA viruses in Western Australia

M Shi, P Neville, J Nicholson, JS Eden, A Imrie… - Journal of …, 2017 - Am Soc Microbiol
Mosquitoes harbor a high diversity of RNA viruses, including many that impact human
health. Despite a growing effort to describe the extent and nature of the mosquito virome …

Abundant and diverse RNA viruses in insects revealed by RNA-Seq analysis: ecological and evolutionary implications

H Wu, R Pang, T Cheng, L Xue, H Zeng, T Lei… - Msystems, 2020 - Am Soc Microbiol
Increasing data indicate that insects serve as major reservoirs and vectors of viruses, which
account for the continuously increasing ecological burden and infectious disease outbreaks …

Jingmenviruses: Ubiquitous, understudied, segmented flavi-like viruses

AMG Colmant, RN Charrel, B Coutard - Frontiers in microbiology, 2022 - frontiersin.org
Jingmenviruses are a group of viruses identified recently, in 2014, and currently classified by
the International Committee on Taxonomy of Viruses as unclassified Flaviviridae. These …

Transcriptome mining extends the host range of the Flaviviridae to non-bilaterians

JCO Mifsud, VA Costa, ME Petrone… - Virus …, 2023 - academic.oup.com
The flavivirids (family Flaviviridae) are a group of positive-sense RNA viruses that include
well-documented agents of human disease. Despite their importance and ubiquity, the …

Meta-transcriptomics and the evolutionary biology of RNA viruses

M Shi, YZ Zhang, EC Holmes - Virus research, 2018 - Elsevier
Metagenomics is transforming the study of virus evolution, allowing the full assemblage of
virus genomes within a host sample to be determined rapidly and cheaply. The genomic …

Emergence of human infection with Jingmen tick virus in China: A retrospective study

N Jia, HB Liu, XB Ni, L Bell-Sakyi, YC Zheng… - …, 2019 - thelancet.com
Background A tick-borne segmented RNA virus called Jingmen tick virus (JMTV) was
recently identified, variants of which were detected in a non-human primate host and fatal …