Yersinia pestis: the natural history of plague

R Barbieri, M Signoli, D Chevé… - Clinical microbiology …, 2020 - Am Soc Microbiol
SUMMARY The Gram-negative bacterium Yersinia pestis is responsible for deadly plague, a
zoonotic disease established in stable foci in the Americas, Africa, and Eurasia. Its …

Yersinia pestis and plague: an updated view on evolution, virulence determinants, immune subversion, vaccination, and diagnostics

CE Demeure, O Dussurget, G Mas Fiol… - Genes & …, 2019 - nature.com
Plague is a vector-borne disease caused by Yersinia pestis. Transmitted by fleas from
rodent reservoirs, Y. pestis emerged< 6000 years ago from an enteric bacterial ancestor …

The source of the Black Death in fourteenth-century central Eurasia

MA Spyrou, L Musralina, GA Gnecchi Ruscone… - Nature, 2022 - nature.com
The origin of the medieval Black Death pandemic (ad 1346–1353) has been a topic of
continuous investigation because of the pandemic's extensive demographic impact and long …

The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

Z Zhou, NF Alikhan, K Mohamed, Y Fan… - Genome …, 2020 - genome.cshlp.org
EnteroBase is an integrated software environment that supports the identification of global
population structures within several bacterial genera that include pathogens. Here, we …

Ancient pathogen genomics as an emerging tool for infectious disease research

MA Spyrou, KI Bos, A Herbig, J Krause - Nature Reviews Genetics, 2019 - nature.com
Over the past decade, a genomics revolution, made possible through the development of
high-throughput sequencing, has triggered considerable progress in the study of ancient …

Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes

MA Spyrou, M Keller, RI Tukhbatova, CL Scheib… - Nature …, 2019 - nature.com
The second plague pandemic, caused by Yersinia pestis, devastated Europe and the
nearby regions between the 14th and 18th centuries AD. Here we analyse human remains …

The third plague pandemic in Europe

B Bramanti, KR Dean, L Walløe… - Proceedings of the …, 2019 - royalsocietypublishing.org
Plague has a long history on the European continent, with evidence of the disease dating
back to the Stone Age. Plague epidemics in Europe during the First and Second Pandemics …

Tracking the transition to agriculture in Southern Europe through ancient DNA analysis of dental calculus

C Ottoni, D Borić, O Cheronet… - Proceedings of the …, 2021 - National Acad Sciences
Archaeological dental calculus, or mineralized plaque, is a key tool to track the evolution of
oral microbiota across time in response to processes that impacted our culture and biology …

Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager

JAF Yates, TC Lamnidis, M Borry, AA Valtueña… - PeerJ, 2021 - peerj.com
The broadening utilisation of ancient DNA to address archaeological, palaeontological, and
biological questions is resulting in a rising diversity in the size of laboratories and scale of …

Malaria in Europe: a historical perspective

MA Boualam, B Pradines, M Drancourt… - Frontiers in …, 2021 - frontiersin.org
Endemic malaria, which claimed 229 million new cases and 409,000 deaths in 2019 mainly
in Africa, was eradicated from Europe by the mid-20th century. Historical descriptions of …