Graph neural networks for materials science and chemistry

P Reiser, M Neubert, A Eberhard, L Torresi… - Communications …, 2022 - nature.com
Abstract Machine learning plays an increasingly important role in many areas of chemistry
and materials science, being used to predict materials properties, accelerate simulations …

Generative models as an emerging paradigm in the chemical sciences

DM Anstine, O Isayev - Journal of the American Chemical Society, 2023 - ACS Publications
Traditional computational approaches to design chemical species are limited by the need to
compute properties for a vast number of candidates, eg, by discriminative modeling …

A complete survey on generative ai (aigc): Is chatgpt from gpt-4 to gpt-5 all you need?

C Zhang, C Zhang, S Zheng, Y Qiao, C Li… - arXiv preprint arXiv …, 2023 - arxiv.org
As ChatGPT goes viral, generative AI (AIGC, aka AI-generated content) has made headlines
everywhere because of its ability to analyze and create text, images, and beyond. With such …

Digress: Discrete denoising diffusion for graph generation

C Vignac, I Krawczuk, A Siraudin, B Wang… - arXiv preprint arXiv …, 2022 - arxiv.org
This work introduces DiGress, a discrete denoising diffusion model for generating graphs
with categorical node and edge attributes. Our model utilizes a discrete diffusion process …

Generative models for molecular discovery: Recent advances and challenges

C Bilodeau, W Jin, T Jaakkola… - Wiley …, 2022 - Wiley Online Library
Abstract Development of new products often relies on the discovery of novel molecules.
While conventional molecular design involves using human expertise to propose …

A comprehensive survey on deep graph representation learning

W Ju, Z Fang, Y Gu, Z Liu, Q Long, Z Qiao, Y Qin… - Neural Networks, 2024 - Elsevier
Graph representation learning aims to effectively encode high-dimensional sparse graph-
structured data into low-dimensional dense vectors, which is a fundamental task that has …

Normalizing flows for probabilistic modeling and inference

G Papamakarios, E Nalisnick, DJ Rezende… - Journal of Machine …, 2021 - jmlr.org
Normalizing flows provide a general mechanism for defining expressive probability
distributions, only requiring the specification of a (usually simple) base distribution and a …

Normalizing flows: An introduction and review of current methods

I Kobyzev, SJD Prince… - IEEE transactions on …, 2020 - ieeexplore.ieee.org
Normalizing Flows are generative models which produce tractable distributions where both
sampling and density evaluation can be efficient and exact. The goal of this survey article is …

Language models can learn complex molecular distributions

D Flam-Shepherd, K Zhu, A Aspuru-Guzik - Nature Communications, 2022 - nature.com
Deep generative models of molecules have grown immensely in popularity, trained on
relevant datasets, these models are used to search through chemical space. The …

Graphaf: a flow-based autoregressive model for molecular graph generation

C Shi, M Xu, Z Zhu, W Zhang, M Zhang… - arXiv preprint arXiv …, 2020 - arxiv.org
Molecular graph generation is a fundamental problem for drug discovery and has been
attracting growing attention. The problem is challenging since it requires not only generating …