Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …
Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …
aiming to detect newly arrived exotic taxa as well as track the population levels of …
Microbiome definition re-visited: old concepts and new challenges
The field of microbiome research has evolved rapidly over the past few decades and has
become a topic of great scientific and public interest. As a result of this rapid growth in …
become a topic of great scientific and public interest. As a result of this rapid growth in …
Biases in bulk: DNA metabarcoding of marine communities and the methodology involved
LM van der Loos, R Nijland - Molecular Ecology, 2021 - Wiley Online Library
With the growing anthropogenic pressure on marine ecosystems, the need for efficient
monitoring of biodiversity grows stronger. DNA metabarcoding of bulk samples is …
monitoring of biodiversity grows stronger. DNA metabarcoding of bulk samples is …
A global microbiome survey of vineyard soils highlights the microbial dimension of viticultural terroirs
The microbial biodiversity found in different vitivinicultural regions is an important
determinant of wine terroir. It should be studied and preserved, although it may, in the future …
determinant of wine terroir. It should be studied and preserved, although it may, in the future …
Seed microbiota revealed by a large‐scale meta‐analysis including 50 plant species
M Simonin, M Briand, G Chesneau… - New …, 2022 - Wiley Online Library
Seed microbiota constitutes a primary inoculum for plants that is gaining attention owing to
its role for plant health and productivity. Here, we performed a meta‐analysis on 63 seed …
its role for plant health and productivity. Here, we performed a meta‐analysis on 63 seed …
A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
A Hakimzadeh, A Abdala Asbun… - Molecular Ecology …, 2024 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …
monitoring biodiversity in ecology. However, taxa identifications produced through …
The diversity and distribution of endophytes across biomes, plant phylogeny and host tissues: how far have we come and where do we go from here?
JG Harrison, EA Griffin - Environmental microbiology, 2020 - Wiley Online Library
The interiors of plants are colonized by diverse microorganisms that are referred to as
endophytes. Endophytes have received much attention over the past few decades, yet many …
endophytes. Endophytes have received much attention over the past few decades, yet many …
Daring to be differential: metabarcoding analysis of soil and plant-related microbial communities using amplicon sequence variants and operational taxonomical units
Background Microorganisms are not only indispensable to ecosystem functioning, they are
also keystones for emerging technologies. In the last 15 years, the number of studies on …
also keystones for emerging technologies. In the last 15 years, the number of studies on …
Advancing biological invasion hypothesis testing using functional diversity indices
Pioneering investigations on the effects of introduced populations on community structure,
ecosystem functioning and services have focused on the effects of invaders on taxonomic …
ecosystem functioning and services have focused on the effects of invaders on taxonomic …