SF3B1 association with chromatin determines splicing outcomes

N Kfir, G Lev-Maor, O Glaich, A Alajem, A Datta, SK Sze… - Cell reports, 2015 - cell.com
Much remains unknown concerning the mechanism by which the splicing machinery
pinpoints short exons within intronic sequences and how splicing factors are directed to their …

The histone variant H2A. Bbd is enriched at sites of DNA synthesis

V Sansoni, CS Casas-Delucchi, M Rajan… - Nucleic acids …, 2014 - academic.oup.com
Histone variants play an important role in shaping the mammalian epigenome and their
aberrant expression is frequently observed in several types of cancer. However, the …

[HTML][HTML] Differential association of chromatin proteins identifies BAF60a/SMARCD1 as a regulator of embryonic stem cell differentiation

A Alajem, A Biran, A Harikumar, BS Sailaja… - Cell reports, 2015 - cell.com
Embryonic stem cells (ESCs) possess a distinct chromatin conformation maintained by
specialized chromatin proteins. To identify chromatin regulators in ESCs, we developed a …

Profiling of the chromatin-associated proteome identifies HP1BP3 as a novel regulator of cell cycle progression

B Dutta, Y Ren, P Hao, KH Sim, E Cheow… - Molecular & Cellular …, 2014 - ASBMB
The chromatin-associated proteome (chromatome) regulates cellular gene expression by
restricting access of transcriptional machinery to template DNA, and dynamic re-modeling of …

Quantitative profiling of chromatome dynamics reveals a novel role for HP1BP3 in hypoxia-induced oncogenesis

B Dutta, R Yan, SK Lim, JP Tam, SK Sze - Molecular & Cellular Proteomics, 2014 - ASBMB
In contrast to the intensely studied genetic and epigenetic changes that induce host cell
transformation to initiate tumor development, those that promote the malignant progression …

Dietary phytochemical PEITC restricts tumor development via modulation of epigenetic writers and erasers

JE Park, Y Sun, SK Lim, JP Tam, M Dekker, H Chen… - Scientific Reports, 2017 - nature.com
Dietary intake of bioactive phytochemicals including the cruciferous vegetable derivative
phenethyl isothiocyanate (PEITC) can reduce risk of human cancers, but possible epigenetic …

[HTML][HTML] Cutting edge: Synchronization of IRF1, JunB, and C/EBPβ activities during TLR3–TLR7 cross-talk orchestrates Timely cytokine synergy in the proinflammatory …

Q Liu, Y Zhu, WK Yong, NSK Sze, NS Tan… - The Journal of …, 2015 - journals.aai.org
Multiple pathogen-associated molecular pattern–induced TLR pathway cross-talk provokes
proinflammatory cytokine synergy in macrophages, which is important for pathogen …

The changing chromatome as a driver of disease: a panoramic view from different methodologies

I Espejo, L Di Croce, S Aranda - BioEssays, 2020 - Wiley Online Library
Chromatin‐bound proteins underlie several fundamental cellular functions, such as control
of gene expression and the faithful transmission of genetic and epigenetic information …

Tousled-like kinase-dependent phosphorylation of Rad9 plays a role in cell cycle progression and G2/M checkpoint exit

R Kelly, SK Davey - PloS one, 2013 - journals.plos.org
Genomic integrity is preserved by checkpoints, which act to delay cell cycle progression in
the presence of DNA damage or replication stress. The heterotrimeric Rad9-Rad1-Hus1 (9-1 …

Genome-wide analysis in Plasmodium falciparum reveals early and late phases of RNA polymerase II occupancy during the infectious cycle

R Rai, L Zhu, H Chen, AP Gupta, SK Sze, J Zheng… - BMC genomics, 2014 - Springer
Background Over the course of its intraerythrocytic developmental cycle (IDC), the malaria
parasite Plasmodium falciparum tightly orchestrates the rise and fall of transcript levels for …