[HTML][HTML] Automated and semi-automated enhancement, segmentation and tracing of cytoskeletal networks in microscopic images: A review
B Özdemir, R Reski - Computational and structural biotechnology journal, 2021 - Elsevier
Cytoskeletal filaments are structures of utmost importance to biological cells and organisms
due to their versatility and the significant functions they perform. These biopolymers are most …
due to their versatility and the significant functions they perform. These biopolymers are most …
Segmentation and tracking of cytoskeletal filaments using open active contours
We use open active contours to quantify cytoskeletal structures imaged by fluorescence
microscopy in two and three dimensions. We developed an interactive software tool for …
microscopy in two and three dimensions. We developed an interactive software tool for …
Quantitative mapping of keratin networks in 3D
R Windoffer, N Schwarz, S Yoon, T Piskova… - Elife, 2022 - elifesciences.org
Mechanobiology requires precise quantitative information on processes taking place in
specific 3D microenvironments. Connecting the abundance of microscopical, molecular …
specific 3D microenvironments. Connecting the abundance of microscopical, molecular …
Settling dynamics of Brownian chains in viscous fluids
We investigate the dynamics of sedimenting Brownian filaments using experimental,
computational, and theoretical approaches. The filaments under consideration are …
computational, and theoretical approaches. The filaments under consideration are …
Active Canny: edge detection and recovery with open active contour models
The authors introduce an edge detection and recovery framework based on open active
contour models (snakelets) to mitigate the problem of noisy or broken edges produced by …
contour models (snakelets) to mitigate the problem of noisy or broken edges produced by …
3D actin network centerline extraction with multiple active contours
Fluorescence microscopy is frequently used to study two and three dimensional network
structures formed by cytoskeletal polymer fibers such as actin filaments and actin cables …
structures formed by cytoskeletal polymer fibers such as actin filaments and actin cables …
An integrated enhancement and reconstruction strategy for the quantitative extraction of actin stress fibers from fluorescence micrographs
Z Zhang, S Xia, P Kanchanawong - BMC bioinformatics, 2017 - Springer
Background The stress fibers are prominent organization of actin filaments that perform
important functions in cellular processes such as migration, polarization, and traction force …
important functions in cellular processes such as migration, polarization, and traction force …
Automatic extraction of actin networks in plants
J Hembrow, MJ Deeks… - PLOS Computational …, 2023 - journals.plos.org
The actin cytoskeleton is essential in eukaryotes, not least in the plant kingdom where it
plays key roles in cell expansion, cell division, environmental responses and pathogen …
plays key roles in cell expansion, cell division, environmental responses and pathogen …
Combining image restoration and traction force microscopy to study extracellular matrix-dependent keratin filament network plasticity
Keratin intermediate filaments are dynamic cytoskeletal components that are responsible for
tuning the mechanical properties of epithelial tissues. Although it is known that keratin …
tuning the mechanical properties of epithelial tissues. Although it is known that keratin …
Extraction and analysis of actin networks based on open active contour models
Network structures formed by actin filaments are present in many kinds of fluorescence
microscopy images. In order to quantify the conformations and dynamics of such actin …
microscopy images. In order to quantify the conformations and dynamics of such actin …