Plant small RNAs: their biogenesis, regulatory roles, and functions

J Zhan, BC Meyers - Annual Review of Plant Biology, 2023 - annualreviews.org
Plant cells accumulate small RNA molecules that regulate plant development, genome
stability, and environmental responses. These small RNAs fall into three major classes …

How important are transposons for plant evolution?

D Lisch - Nature Reviews Genetics, 2013 - nature.com
For decades, transposable elements have been known to produce a wide variety of changes
in plant gene expression and function. This has led to the idea that transposable element …

RNA-directed DNA methylation

RM Erdmann, CL Picard - PLoS genetics, 2020 - journals.plos.org
RNA-directed DNA methylation (RdDM) is a biological process in which non-coding RNA
molecules direct the addition of DNA methylation to specific DNA sequences. The RdDM …

Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements

D Secco, C Wang, H Shou, MD Schultz, S Chiarenza… - elife, 2015 - elifesciences.org
Cytosine DNA methylation (mC) is a genome modification that can regulate the expression
of coding and non-coding genetic elements. However, little is known about the involvement …

Epigenetic memory for stress response and adaptation in plants

T Kinoshita, M Seki - Plant and Cell Physiology, 2014 - academic.oup.com
In contrast to the majority of animal species, plants are sessile organisms and are, therefore,
constantly challenged by environmental perturbations. Over the past few decades, our …

OsSPL14 promotes panicle branching and higher grain productivity in rice

K Miura, M Ikeda, A Matsubara, XJ Song, M Ito… - Nature …, 2010 - nature.com
Identification of alleles that improve crop production and lead to higher-yielding varieties are
needed for food security. Here we show that the quantitative trait locus WFP (WEALTHY …

Impact of transposable elements on polyploid plant genomes

CM Vicient, JM Casacuberta - Annals of Botany, 2017 - academic.oup.com
Background The growing wealth of knowledge on whole-plant genome sequences is
highlighting the key role of transposable elements (TEs) in plant evolution, as a driver of …

Regulation and function of DNA methylation in plants and animals

XJ He, T Chen, JK Zhu - Cell research, 2011 - nature.com
DNA methylation is an important epigenetic mark involved in diverse biological processes.
In plants, DNA methylation can be established through the RNA-directed DNA methylation …

SRA-and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation

LM Johnson, J Du, CJ Hale, S Bischof, S Feng… - Nature, 2014 - nature.com
RNA-directed DNA methylation in Arabidopsis thaliana depends on the upstream synthesis
of 24-nucleotide small interfering RNAs (siRNAs) by RNA POLYMERASE IV (Pol IV), and …

Epigenetic inheritance in plants

IR Henderson, SE Jacobsen - Nature, 2007 - nature.com
The function of plant genomes depends on chromatin marks such as the methylation of DNA
and the post-translational modification of histones. Techniques for studying model plants …