Genomic selection in cereal breeding

CD Robertsen, RL Hjortshøj, LL Janss - Agronomy, 2019 - mdpi.com
Genomic Selection (GS) is a method in plant breeding to predict the genetic value of
untested lines based on genome-wide marker data. The method has been widely explored …

[HTML][HTML] Underlying genetic architecture of resistance to mastitis in dairy cattle: A systematic review and gene prioritization analysis of genome-wide association …

SG Narayana, E de Jong, FS Schenkel… - Journal of Dairy …, 2023 - Elsevier
Mastitis, the most frequent disease in dairy cattle. Resistance to mastitis is a complex,
polygenic trait controlled by several genes, each with small effects. Genome-wide …

Genetic evaluation using single-step genomic best linear unbiased predictor in American Angus

DAL Lourenco, S Tsuruta, BO Fragomeni… - Journal of animal …, 2015 - academic.oup.com
Predictive ability of genomic EBV when using single-step genomic BLUP (ssGBLUP) in
Angus cattle was investigated. Over 6 million records were available on birth weight (BiW) …

[HTML][HTML] Quantitative trait loci markers derived from whole genome sequence data increases the reliability of genomic prediction

RF Brøndum, G Su, L Janss, G Sahana… - Journal of dairy …, 2015 - Elsevier
This study investigated the effect on the reliability of genomic prediction when a small
number of significant variants from single marker analysis based on whole genome …

Weighting strategies for single-step genomic BLUP: an iterative approach for accurate calculation of GEBV and GWAS

X Zhang, D Lourenco, I Aguilar, A Legarra… - Frontiers in …, 2016 - frontiersin.org
Genomic Best Linear Unbiased Predictor (GBLUP) assumes equal variance for all single
nucleotide polymorphisms (SNP). When traits are influenced by major SNP, Bayesian …

Incorporating genome-wide association mapping results into genomic prediction models for grain yield and yield stability in CIMMYT spring bread wheat

D Sehgal, U Rosyara, S Mondal, R Singh… - Frontiers in plant …, 2020 - frontiersin.org
Untangling the genetic architecture of grain yield (GY) and yield stability is an important
determining factor to optimize genomics-assisted selection strategies in wheat. We …

AGHmatrix: genetic relationship matrices in R

RR Amadeu, AAF Garcia, PR Munoz… - Bioinformatics, 2023 - academic.oup.com
Motivation The resemble between relatives computed from pedigree and genomic data is an
important resource for geneticists and ecologists, who are interested in understanding how …

KAML: improving genomic prediction accuracy of complex traits using machine learning determined parameters

L Yin, H Zhang, X Zhou, X Yuan, S Zhao, X Li, X Liu - Genome biology, 2020 - Springer
Advances in high-throughput sequencing technologies have reduced the cost of genotyping
dramatically and led to genomic prediction being widely used in animal and plant breeding …

Prospects for genomic selection in cassava breeding

MD Wolfe, DP Del Carpio, O Alabi… - The Plant …, 2017 - Wiley Online Library
Cassava (Manihot esculenta Crantz) is a clonally propagated staple food crop in the tropics.
Genomic selection (GS) has been implemented at three breeding institutions in Africa to …

Incorporation of causative quantitative trait nucleotides in single-step GBLUP

BO Fragomeni, DAL Lourenco, Y Masuda… - Genetics Selection …, 2017 - Springer
Background Much effort is put into identifying causative quantitative trait nucleotides (QTN)
in animal breeding, empowered by the availability of dense single nucleotide polymorphism …