Advances in plant genome sequencing

JP Hamilton, C Robin Buell - The Plant Journal, 2012 - Wiley Online Library
The study of plant biology in the 21st century is, and will continue to be, vastly different from
that in the 20th century. One driver for this has been the use of genomics methods to reveal …

Shifting the limits in wheat research and breeding using a fully annotated reference genome

International Wheat Genome Sequencing Consortium … - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …

A reference genome for pea provides insight into legume genome evolution

J Kreplak, MA Madoui, P Cápal, P Novák, K Labadie… - Nature …, 2019 - nature.com
We report the first annotated chromosome-level reference genome assembly for pea, Gregor
Mendel's original genetic model. Phylogenetics and paleogenomics show genomic …

Genome sequence of the progenitor of wheat A subgenome Triticum urartu

HQ Ling, B Ma, X Shi, H Liu, L Dong, H Sun, Y Cao… - Nature, 2018 - nature.com
Triticum urartu (diploid, AA) is the progenitor of the A subgenome of tetraploid (Triticum
turgidum, AABB) and hexaploid (Triticum aestivum, AABBDD) wheat,. Genomic studies of T …

Are cereal grasses a single genetic system?

M Mascher, MP Marone, M Schreiber, N Stein - Nature Plants, 2024 - nature.com
In 1993, a passionate and provocative call to arms urged cereal researchers to consider the
taxon they study as a single genetic system and collaborate with each other. Since then, that …

A mosaic monoploid reference sequence for the highly complex genome of sugarcane

O Garsmeur, G Droc, R Antonise, J Grimwood… - Nature …, 2018 - nature.com
Sugarcane (Saccharum spp.) is a major crop for sugar and bioenergy production. Its highly
polyploid, aneuploid, heterozygous, and interspecific genome poses major challenges for …

[HTML][HTML] The tomato genome sequence provides insights into fleshy fruit evolution

xx Tomato Genome Consortium - Nature, 2012 - ncbi.nlm.nih.gov
AUTHOR CONTRIBUTIONS AAL, ABA, ABE, ABG, ABO, AFI, AGR, AHA, AHU, AJA, AJM,
AJO, AKM, AKS, AKT, AMO, APA, ARI, ASI, ATR, AUS, AVE, BAR, BAW, BCK, BCM, BDK …

Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach

JA Poland, PJ Brown, ME Sorrells, JL Jannink - PloS one, 2012 - journals.plos.org
Advancements in next-generation sequencing technology have enabled whole genome re-
sequencing in many species providing unprecedented discovery and characterization of …

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

JA Chapman, M Mascher, A Buluç, K Barry… - Genome biology, 2015 - Springer
Polyploid species have long been thought to be recalcitrant to whole-genome assembly. By
combining high-throughput sequencing, recent developments in parallel computing, and …

Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63

J Zhang, LL Chen, F Xing, DA Kudrna… - Proceedings of the …, 2016 - National Acad Sciences
Asian cultivated rice consists of two subspecies: Oryza sativa subsp. indica and O. sativa
subsp. japonica. Despite the fact that indica rice accounts for over 70% of total rice …