[HTML][HTML] iVaccine-Deep: Prediction of COVID-19 mRNA vaccine degradation using deep learning

A Muneer, SM Fati, NA Akbar, D Agustriawan… - Journal of King Saud …, 2022 - Elsevier
Messenger RNA (mRNA) has emerged as a critical global technology that requires global
joint efforts from different entities to develop a COVID-19 vaccine. However, the chemical …

Deep learning for automated classification and characterization of amorphous materials

K Swanson, S Trivedi, J Lequieu, K Swanson… - Soft matter, 2020 - pubs.rsc.org
It is difficult to quantify structure–property relationships and to identify structural features of
complex materials. The characterization of amorphous materials is especially challenging …

Scalable Inhibitors of the Nsp3–Nsp4 Coupling in SARS-CoV-2

AR Azizogli, V Pai, F Coppola, R Jafari, JB Dodd-o… - ACS …, 2023 - ACS Publications
The human Betacoronavirus SARS-CoV-2 is a novel pathogen claiming millions of lives and
causing a global pandemic that has disrupted international healthcare systems, economies …

A deep graph network–enhanced sampling approach to efficiently explore the space of reduced representations of proteins

F Errica, M Giulini, D Bacciu, R Menichetti… - Frontiers in Molecular …, 2021 - frontiersin.org
The limits of molecular dynamics (MD) simulations of macromolecules are steadily pushed
forward by the relentless development of computer architectures and algorithms. The …

Geometric learning of knot topology

JL Sleiman, F Conforto, YAG Fosado, D Michieletto - Soft Matter, 2024 - pubs.rsc.org
Knots are deeply entangled with every branch of science. One of the biggest open
challenges in knot theory is to formalise a knot invariant that can unambiguously and …

Deep learning model with ensemble techniques to compute the secondary structure of proteins

R AlGhamdi, A Aziz, M Alshehri, KR Pardasani… - The Journal of …, 2021 - Springer
Protein secondary structure is the local conformation assigned to protein sequences with the
help of its three-dimensional structure. Assigning the local conformation to protein …

Autoencoder-assisted study of directed percolation with spatial long-range interactions

Y Wang, Y Yang, W Li - arXiv preprint arXiv:2311.12426, 2023 - arxiv.org
Spatial L {\'{e}} vy-like flights are introduced as a way to absorbing phase transitions to
produce non-local interactions. We utilize the autoencoder, an unsupervised learning …

Artificial neural network (ANN) techniques in solving the protein folding problem

R Satpathy - Advanced AI Techniques and Applications in …, 2021 - taylorfrancis.com
Proteins are one of the essential bio-molecules and control almost all functions in the living
cell. They act to perform many of the biological functions in different forms, including catalytic …

Accelerating the identification of informative reduced representations of proteins with deep learning for graphs

F Errica, M Giulini, D Bacciu, R Menichetti… - arXiv preprint arXiv …, 2020 - arxiv.org
The limits of molecular dynamics (MD) simulations of macromolecules are steadily pushed
forward by the relentless developments of computer architectures and algorithms. This …

[PDF][PDF] Computer and Information Sciences

A Muneer, SM Fati, NA Akbar, D Agustriawan… - researchgate.net
abstract Messenger RNA (mRNA) has emerged as a critical global technology that requires
global joint efforts from different entities to develop a COVID-19 vaccine. However, the …