tRNAs as regulators of biological processes

M Raina, M Ibba - Frontiers in genetics, 2014 - frontiersin.org
Transfer RNAs (tRNA) are best known for their role as adaptors during translation of the
genetic code. Beyond their canonical role during protein biosynthesis, tRNAs also perform …

Ribosomal peptide natural products: bridging the ribosomal and nonribosomal worlds

JA McIntosh, MS Donia, EW Schmidt - Natural product reports, 2009 - pubs.rsc.org
Covering: up to July 2008 Ribosomally synthesized bacterial natural products rival the
nonribosomal peptides in their structural and functional diversity. The last decade has seen …

Dehydroamino acid residues in bioactive natural products

S Wang, K Wu, YJ Tang, H Deng - Natural Product Reports, 2024 - pubs.rsc.org
Covering: 2000 to up to 2023 α, β-Dehydroamino acids (dhAAs) are unsaturated
nonproteinogenic amino acids found in a wide array of naturally occurring peptidyl …

Cyclodipeptides: An overview of their biosynthesis and biological activity

AK Mishra, J Choi, SJ Choi, KH Baek - Molecules, 2017 - mdpi.com
Cyclodipeptides (CDP) represent a diverse family of small, highly stable, cyclic peptides that
are produced as secondary functional metabolites or side products of protein metabolism by …

Cyclodipeptide synthases are a family of tRNA-dependent peptide bond–forming enzymes

M Gondry, L Sauguet, P Belin, R Thai… - Nature chemical …, 2009 - nature.com
Cyclodipeptides and their derivatives belong to the diketopiperazine (DKP) family, which is
comprised of a broad array of natural products that exhibit useful biological properties. In the …

The sirodesmin biosynthetic gene cluster of the plant pathogenic fungus Leptosphaeria maculans

DM Gardiner, AJ Cozijnsen, LM Wilson… - Molecular …, 2004 - Wiley Online Library
Sirodesmin PL is a phytotoxin produced by the fungus Leptosphaeria maculans, which
causes blackleg disease of canola (Brassica napus). This phytotoxin belongs to the …

Bacterial transfer rnas

J Shepherd, M Ibba - FEMS microbiology reviews, 2015 - academic.oup.com
Transfer RNA is an essential adapter molecule that is found across all three domains of life.
The primary role of transfer RNA resides in its critical involvement in the accurate translation …

The expanding spectrum of diketopiperazine natural product biosynthetic pathways containing cyclodipeptide synthases

P Borgman, RD Lopez, AL Lane - Organic & biomolecular chemistry, 2019 - pubs.rsc.org
Microorganisms are remarkable chemists, with enzymes as their tools for executing multi-
step syntheses to yield myriad natural products. Microbial synthetic aptitudes are illustrated …

The nonribosomal synthesis of diketopiperazines in tRNA-dependent cyclodipeptide synthase pathways

P Belin, M Moutiez, S Lautru, J Seguin… - Natural product …, 2012 - pubs.rsc.org
Covering: up to 2012 We review here work on the biosynthesis of diketopiperazines (DKPs),
a large class of natural products with noteworthy biological activities, focusing on the …

Molecular dynamics simulations guide chimeragenesis and engineered control of chemoselectivity in diketopiperazine dimerases

VV Shende, NR Harris, JN Sanders… - Angewandte Chemie …, 2023 - Wiley Online Library
In the biosynthesis of the tryptophan‐linked dimeric diketopiperazines (DKPs), cytochromes
P450 selectively couple DKP monomers to generate a variety of intricate and isomeric …