Natural products and their biological targets: proteomic and metabolomic labeling strategies

T Böttcher, M Pitscheider… - Angewandte Chemie …, 2010 - Wiley Online Library
Activity‐based protein profiling (ABPP) has matured into a standard method for the fast,
sensitive, and selective identification of enzyme activity and inhibitors in proteomes. By …

Regulation and control of metabolic fluxes in microbes

L Gerosa, U Sauer - Current opinion in biotechnology, 2011 - Elsevier
After about ten years of research renaissance in metabolism, the present challenge is to
understand how metabolic fluxes are controlled by a complex interplay of overlapping …

Arylfluorosulfates inactivate intracellular lipid binding protein (s) through chemoselective SuFEx reaction with a binding site Tyr residue

W Chen, J Dong, L Plate, DE Mortenson… - Journal of the …, 2016 - ACS Publications
Arylfluorosulfates have appeared only rarely in the literature and have not been explored as
probes for covalent conjugation to proteins, possibly because they were assumed to …

Ligand activation of ERRα by cholesterol mediates statin and bisphosphonate effects

W Wei, AG Schwaid, X Wang, X Wang, S Chen, Q Chu… - Cell metabolism, 2016 - cell.com
Nuclear receptors (NRs) are key regulators of gene expression and physiology. Nearly half
of all human NRs lack endogenous ligands including estrogen-related receptor α (ERRα) …

[HTML][HTML] Extensive in vivo metabolite-protein interactions revealed by large-scale systematic analyses

X Li, TA Gianoulis, KY Yip, M Gerstein, M Snyder - Cell, 2010 - cell.com
Natural small compounds comprise most cellular molecules and bind proteins as substrates,
products, cofactors, and ligands. However, a large-scale investigation of in vivo protein …

Methods for the elucidation of protein-small molecule interactions

A McFedries, A Schwaid, A Saghatelian - Chemistry & biology, 2013 - cell.com
Understanding the interactions between small molecules and proteins can be approached
from different perspectives and is important for the advancement of basic science and drug …

Activity-based metabolomic profiling of enzymatic function: identification of Rv1248c as a mycobacterial 2-hydroxy-3-oxoadipate synthase

LPS de Carvalho, H Zhao, CE Dickinson, NM Arango… - Chemistry & biology, 2010 - cell.com
Activity based metabolomic profiling (ABMP) allows unbiased discovery of enzymatic
activities encoded by genes of unknown function, and applies liquid-chromatography mass …

Decoding the molecular interplay in the central dogma: An overview of mass spectrometry‐based methods to investigate protein‐metabolite interactions

P Stincone, A Naimi, AJ Saviola, R Reher… - …, 2024 - Wiley Online Library
With the emergence of next‐generation nucleotide sequencing and mass spectrometry‐
based proteomics and metabolomics tools, we have comprehensive and scalable methods …

Differential volatile signatures from skin, naevi and melanoma: a novel approach to detect a pathological process

T Abaffy, R Duncan, DD Riemer, O Tietje, G Elgart… - PloS one, 2010 - journals.plos.org
Background Early detection of melanoma is of great importance to reduce mortality.
Discovering new melanoma biomarkers would improve early detection and diagnosis. Here …

Towards detecting regulatory protein–metabolite interactions

M Diether, U Sauer - Current opinion in microbiology, 2017 - Elsevier
Highlights•Protein–metabolite interactions are mapped using protein-centric and metabolite-
centric approaches.•Proteome-wide monitoring of ligand-induced effects enables HTP …