Comparative protein structure modeling of genes and genomes
MA Martí-Renom, AC Stuart, A Fiser… - Annual review of …, 2000 - annualreviews.org
▪ Abstract Comparative modeling predicts the three-dimensional structure of a given protein
sequence (target) based primarily on its alignment to one or more proteins of known …
sequence (target) based primarily on its alignment to one or more proteins of known …
Advances in homology protein structure modeling
Z Xiang - Current Protein and Peptide Science, 2006 - ingentaconnect.com
Homology modeling plays a central role in determining protein structure in the structural
genomics project. The importance of homology modeling has been steadily increasing …
genomics project. The importance of homology modeling has been steadily increasing …
Protein structure modeling with MODELLER
B Webb, A Sali - Functional genomics: Methods and protocols, 2017 - Springer
Genome sequencing projects have resulted in a rapid increase in the number of known
protein sequences. In contrast, only about one-hundredth of these sequences have been …
protein sequences. In contrast, only about one-hundredth of these sequences have been …
Comparative protein structure modeling using MODELLER
B Webb, A Sali - Current protocols in bioinformatics, 2016 - Wiley Online Library
Comparative protein structure modeling predicts the three‐dimensional structure of a given
protein sequence (target) based primarily on its alignment to one or more proteins of known …
protein sequence (target) based primarily on its alignment to one or more proteins of known …
A hierarchical approach to all‐atom protein loop prediction
MP Jacobson, DL Pincus, CS Rapp… - Proteins: Structure …, 2004 - Wiley Online Library
The application of all‐atom force fields (and explicit or implicit solvent models) to protein
homology‐modeling tasks such as side‐chain and loop prediction remains challenging both …
homology‐modeling tasks such as side‐chain and loop prediction remains challenging both …
Modeling of loops in protein structures
Comparative protein structure prediction is limited mostly by the errors in alignment and loop
modeling. We describe here a new automated modeling technique that significantly …
modeling. We describe here a new automated modeling technique that significantly …
[图书][B] Protein structure modeling with MODELLER
B Webb, A Sali - 2021 - Springer
Genome sequencing projects have resulted in a rapid increase in the number of known
protein sequences. In contrast, only about one-hundredth of these sequences have been …
protein sequences. In contrast, only about one-hundredth of these sequences have been …
Protein structure modeling with MODELLER
N Eswar, D Eramian, B Webb, MY Shen… - Structural proteomics: high …, 2008 - Springer
Genome sequencing projects have resulted in a rapid increase in the number of known
protein sequences. In contrast, only about one-hundredth of these sequences have been …
protein sequences. In contrast, only about one-hundredth of these sequences have been …
ModLoop: automated modeling of loops in protein structures
ModLoop is a web server for automated modeling of loops in protein structures. The input is
the atomic coordinates of the protein structure in the Protein Data Bank format, and the …
the atomic coordinates of the protein structure in the Protein Data Bank format, and the …
Cyclic coordinate descent: A robotics algorithm for protein loop closure
AA Canutescu, RL Dunbrack Jr - Protein science, 2003 - Wiley Online Library
In protein structure prediction, it is often the case that a protein segment must be adjusted to
connect two fixed segments. This occurs during loop structure prediction in homology …
connect two fixed segments. This occurs during loop structure prediction in homology …