Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation

GCL Wong, JD Antani, PP Lele, J Chen, B Nan… - Physical …, 2021 - iopscience.iop.org
Bacterial biofilms are communities of bacteria that exist as aggregates that can adhere to
surfaces or be free-standing. This complex, social mode of cellular organization is …

Microbial community coalescence: does it matter in the Three Gorges Reservoir?

Y Gao, W Zhang, Y Li - Water Research, 2021 - Elsevier
The microbial community coalescence describes the mixing of microbial communities and
the merging of their surrounding environments. Despite its prevalence in natural ecosystems …

Microbial active matter: A topological framework

A Sengupta - Frontiers in Physics, 2020 - frontiersin.org
Topology transcends boundaries that conventionally delineate physical, biological, and
engineering sciences. Our ability to mathematically describe topology, combined with recent …

Morphological computation and decentralized learning in a swarm of sterically interacting robots

MY Ben Zion, J Fersula, N Bredeche, O Dauchot - Science Robotics, 2023 - science.org
Whereas naturally occurring swarms thrive when crowded, physical interactions in robotic
swarms are either avoided or carefully controlled, thus limiting their operational density …

Autonomous waves and global motion modes in living active solids

H Xu, Y Huang, R Zhang, Y Wu - Nature Physics, 2023 - nature.com
Elastic active matter—also called an active solid—consists of self-propelled units embedded
in an elastic matrix and it resists deformation. This shape-preserving property and the …

Intra-colony channels in E. coli function as a nutrient uptake system

LM Rooney, WB Amos, PA Hoskisson… - The ISME …, 2020 - academic.oup.com
The ability of microorganisms to grow as aggregated assemblages has been known for
many years, however their structure has remained largely unexplored across multiple spatial …

Chiral active particles are sensitive reporters to environmental geometry

CW Chan, D Wu, K Qiao, KL Fong, Z Yang… - Nature …, 2024 - nature.com
Chiral active particles (CAPs) are self-propelling particles that break time-reversal symmetry
by orbiting or spinning, leading to intriguing behaviors. Here, we examined the dynamics of …

Robust Edge Flows in Swarming Bacterial Colonies

H Li, H Chaté, M Sano, X Shi, HP Zhang - Physical Review X, 2024 - APS
Understanding if and how the chirality of biomolecules is transferred across scales into
larger components and active processes remains elusive. For instance, flagellated bacteria …

Active carpets drive non-equilibrium diffusion and enhanced molecular fluxes

F Guzmán-Lastra, H Löwen… - Nature Communications, 2021 - nature.com
Biological activity is often highly concentrated on surfaces, across the scales from molecular
motors and ciliary arrays to sessile and motile organisms. These 'active carpets' locally inject …

Cooperation in a fluid swarm of fuel-free micro-swimmers

MY Ben Zion, Y Caba, A Modin, PM Chaikin - Nature Communications, 2022 - nature.com
While motile bacteria display rich dynamics in dense colonies, the phoretic nature of artificial
micro-swimmers restricts their activity when crowded. Here we introduce a new class of …