Glioma survival analysis empowered with data engineering—a survey

N Wijethilake, D Meedeniya, C Chitraranjan… - Ieee …, 2021 - ieeexplore.ieee.org
Survival analysis is a critical task in glioma patient management due to the inter and intra
tumor heterogeneity. In clinical practice, clinicians estimate the survival with their …

Ten simple rules and a template for creating workflows-as-applications

MJ Roach, NT Pierce-Ward, R Suchecki… - PLoS computational …, 2022 - journals.plos.org
As bioinformatics analyses increase in size and complexity, workflow managers are
becoming more popular for building pipelines [1–3]. Workflow managers, such as …

Parallel protein multiple sequence alignment approaches: a systematic literature review

SH Almanza-Ruiz, A Chavoya… - The Journal of …, 2023 - Springer
Multiple sequence alignment approaches refer to algorithmic solutions for the alignment of
biological sequences. Since multiple sequence alignment has exponential time complexity …

Constraint-driven complexity-aware data science workflow for AutoBDA

A Siriweera, I Paik, H Huang - IEEE Transactions on Big Data, 2023 - ieeexplore.ieee.org
The Internet of Things, privacy, and technical constraints increase the demand for edge-
based data-driven services, which is one of the major goals of Industry 4.0 and Society 5.0 …

A roadmap to post-moore era for distributed systems

V De Maio, A Aral, I Brandic - Proceedings of the 2022 Workshop on …, 2022 - dl.acm.org
We are reaching the limits of the von Neumann computing architectures (also called Moore's
law era) as there is no free ride of the performance growth from simply shrinking the …

Sphae: An automated toolkit for predicting phage therapy candidates from sequencing data

B Papudeshi, MJ Roach… - Bioinformatics …, 2025 - academic.oup.com
Motivation Phage therapy offers a viable alternative for bacterial infections amid rising
antimicrobial resistance. Its success relies on selecting safe and effective phage candidates …

MCtandem: an efficient tool for large-scale peptide identification on many integrated core (MIC) architecture

C Li, K Li, K Li, F Lin - BMC bioinformatics, 2019 - Springer
Background Tandem mass spectrometry (MS/MS)-based database searching is a widely
acknowledged and widely used method for peptide identification in shotgun proteomics …

Bioinformatics workflows with nosql database in cloud computing

P Wercelens, W da Silva, F Hondo… - Evolutionary …, 2019 - journals.sagepub.com
Scientific workflows can be understood as arrangements of managed activities executed by
different processing entities. It is a regular Bioinformatics approach applying workflows to …

Alzheimer's Disease Diagnosis using Functional and Structural Neuroimaging Modalities

S De Silva, S Dayarathna… - Enabling Technology for …, 2022 - taylorfrancis.com
Alzheimer's disease (AD) is a progressive neurological disease commonly found in adults
over 65 years. Significant growth is estimated for this neurological disorder where diagnosis …

[HTML][HTML] Provenance-and machine learning-based recommendation of parameter values in scientific workflows

DS Junior, E Pacitti, A Paes, D De Oliveira - PeerJ Computer Science, 2021 - peerj.com
Abstract Scientific Workflows (SWfs) have revolutionized how scientists in various domains
of science conduct their experiments. The management of SWfs is performed by complex …