Am I ready for CRISPR? A user's guide to genetic screens

JG Doench - Nature Reviews Genetics, 2018 - nature.com
Exciting new technologies are often self-limiting in their rollout, as access to state-of-the-art
instrumentation or the need for years of hands-on experience, for better or worse, ensures …

Using human genetics to improve safety assessment of therapeutics

KJ Carss, AM Deaton, A Del Rio-Espinola… - Nature Reviews Drug …, 2023 - nature.com
Human genetics research has discovered thousands of proteins associated with complex
and rare diseases. Genome-wide association studies (GWAS) and studies of Mendelian …

The BioGRID interaction database: 2019 update

R Oughtred, C Stark, BJ Breitkreutz, J Rust… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Biological General Repository for Interaction Datasets (BioGRID:
https://thebiogrid. org) is an open access database dedicated to the curation and archival …

Integrated cross-study datasets of genetic dependencies in cancer

C Pacini, JM Dempster, I Boyle, E Gonçalves… - Nature …, 2021 - nature.com
CRISPR-Cas9 viability screens are increasingly performed at a genome-wide scale across
large panels of cell lines to identify new therapeutic targets for precision cancer therapy …

A glance at genome editing with CRISPR–Cas9 technology

A Barman, B Deb, S Chakraborty - Current genetics, 2020 - Springer
In recent years, CRISPR–Cas9 technology is widely acknowledged for having major
applications in the field of biotechnology for editing genome of any organism to treat a …

RNAi/CRISPR screens: from a pool to a valid hit

A Schuster, H Erasimus, S Fritah, PV Nazarov… - Trends in …, 2019 - cell.com
High-throughput genetic screens interfering with gene expression are invaluable tools to
identify gene function and phenotype-to-genotype interactions. Implementing such screens …

Multilayered VBC score predicts sgRNAs that efficiently generate loss-of-function alleles

G Michlits, J Jude, M Hinterndorfer, M de Almeida… - Nature …, 2020 - nature.com
CRISPR–Cas9 screens have emerged as a transformative approach to systematically probe
gene functions. The quality and success of these screens depends on the frequencies of …

Project Score database: a resource for investigating cancer cell dependencies and prioritizing therapeutic targets

L Dwane, FM Behan, E Gonçalves… - Nucleic Acids …, 2021 - academic.oup.com
CRISPR genetic screens in cancer cell models are a powerful tool to elucidate oncogenic
mechanisms and to identify promising therapeutic targets. The Project Score database …

CRISPR-UMI: single-cell lineage tracing of pooled CRISPR–Cas9 screens

G Michlits, M Hubmann, SH Wu, G Vainorius… - Nature …, 2017 - nature.com
Pooled CRISPR screens are a powerful tool for assessments of gene function. However,
conventional analysis is based exclusively on the relative abundance of integrated single …

Using traditional machine learning and deep learning methods for on-and off-target prediction in CRISPR/Cas9: a review

Z Sherkatghanad, M Abdar, J Charlier… - Briefings in …, 2023 - academic.oup.com
Abstract CRISPR/Cas9 (Clustered Regularly Interspaced Short Palindromic Repeats and
CRISPR-associated protein 9) is a popular and effective two-component technology used for …